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@sbollmannMRI Steffen & Saskia Bollmann MRI

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    12 repositories

    • git-github-fundamentals-for-neuroscientists-stebo85

      Public
      git-github-fundamentals-for-neuroscientists-stebo85 created by GitHub Classroom
      0•0•0•0•Updated Aug 28, 2021Aug 28, 2021

    • transparent-singularity

      Public
      Deploying a singularity container so that it behaves like one would have installed software natively
      Shell
      •2•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • neurodesk

      Public
      an installer that makes our containerized applications available on any linux system with singularity installed
      Shell
      •27•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • vnm

      Public
      A lightweight Docker container with a browser-accessible environment for reproducible neuroimaging analysis. Only the required software packages are downloaded from a public library (as Singularity containers).
      Shell
      •
      MIT License
      •4•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • scout2B1

      Public
      Data and code for the paper Abbasi-Rad, S., O’Brien, K., Kelly, S., Vegh, V., Rodell, A., Tesiram, Y., Jin, J., Barth, M., Bollmann, S., 2019. Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power using deep convolutional neural networks. arXiv:1911.08118 [physics].
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Dec 15, 2020Dec 15, 2020

    • MRtrix3_DTI_versus_fixel_analysis_NiPype

      Public
      Python
      •1•0•0•0•Updated Nov 7, 2020Nov 7, 2020

    • qsm

      Public
      This docker and singularity image bundles the tgv-qsm algorithm with bet2, dcm2niix and provides a complete QSM processing pipeline.
      Shell
      •6•1•0•0•Updated Sep 29, 2020Sep 29, 2020

    • LASHiS

      Public
      Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.
      Shell
      •
      GNU General Public License v2.0
      •4•0•0•0•Updated Aug 10, 2020Aug 10, 2020

    • DesignEfficiency

      Public
      This matlab code helps computing the design efficiency
      MATLAB
      •0•1•0•0•Updated Jun 9, 2020Jun 9, 2020

    • uniQC

      Public
      Unified NeuroImaging Quality Control (uniQC) toolbox
      MATLAB
      •4•0•0•0•Updated Nov 24, 2019Nov 24, 2019

    • NonLinRegImprovesSegRel

      Public
      Non linear registration improves segmentation reliability
      Shell
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Sep 18, 2019Sep 18, 2019

    • coreg_sim

      Public
      Simulation code to test the impact of data and alogrithms on coregistration accuracy.
      Python
      •1•0•0•0•Updated Dec 11, 2018Dec 11, 2018