Repositories list

• multiomics-data-analysis-and-integration-training

  Public
  HTML

  •

  Other

  •7•21•1•0•Updated Mar 11, 2025Mar 11, 2025

• genome-jumper

  Public
  Genome Jumper

  C#

  •

  Other

  •0•2•0•0•Updated Mar 11, 2025Mar 11, 2025

• single-cell-r-training

  Public
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline

  R

  •

  Creative Commons Attribution 4.0 International

  •37•1•1•0•Updated Mar 11, 2025Mar 11, 2025

• obelisk-docker

  Public
  Shell

  •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• single-cell-training

  Public
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline

  bioinformaticstutorialrna-seq+ 3courseteachingsingle-cell

  R

  •

  Creative Commons Attribution 4.0 International

  •37•80•2•0•Updated Mar 11, 2025Mar 11, 2025

• first-steps-with-python-training

  Public
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •17•58•5•1•Updated Mar 10, 2025Mar 10, 2025

• sparql-editor

  Public
  💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

  sparqlsparql-querysparql-query-builder+ 2sparql-editoryasgui

  TypeScript

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  MIT License

  •0•11•9•0•Updated Mar 10, 2025Mar 10, 2025

• single-cell-python-training

  Public
  HTML

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  Creative Commons Attribution 4.0 International

  •0•3•0•0•Updated Mar 9, 2025Mar 9, 2025

• spatial-transcriptomics-training

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •1•2•1•0•Updated Mar 9, 2025Mar 9, 2025

• cancer-variants-training

  Public
  Lua

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  Creative Commons Attribution 4.0 International

  •2•5•0•0•Updated Mar 9, 2025Mar 9, 2025

• sparql-examples-utils

  Public
  A tool to maintain and test your SPARQL examples

  qualitysparqlrdf

  Java

  •

  Other

  •17•5•14•1•Updated Mar 7, 2025Mar 7, 2025

• kgsteward

  Public
  Knowledge Graph Steward - Command line tool to help manage RDF store

  Python

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Mar 7, 2025Mar 7, 2025

• CAS-UNIL-intro-to-git

  Public
  Introduction to Git - UNIL CAS in data stewardship

  0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

• sparql-examples

  Public
  A set of SPARQL examples that are used in different SIB resources

  HTML

  •

  Other

  •17•14•6•3•Updated Mar 6, 2025Mar 6, 2025

• CAS-UNIL-intro-to-unix

  Public
  Introduction to Linux / UNIX and the Bash shell - UNIL CAS in data stewardship

  linuxbashunix

  0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• unix-first-steps-training

  Public
  SIB First Steps with UNIX course

  3•6•0•0•Updated Mar 6, 2025Mar 6, 2025

• EPD

  Public
  The Eukaryotic Promoter Database (EPD) website

  promoterstranscription-start-siteeukaryotic+ 1eukaryotic-transcription-signal

  JavaScript

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  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• queryLibrary

  Public
  Collection of OMOP predefined queries.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• dsSwissKnifeClient

  Public
  R

  •1•3•1•0•Updated Mar 3, 2025Mar 3, 2025

• dsSwissKnife

  Public
  R

  •1•4•0•0•Updated Mar 3, 2025Mar 3, 2025

• glittr-stats

  Public
  General statistics of Glittr.org. Comes with the manuscript.

  PostScript

  •0•1•0•0•Updated Mar 2, 2025Mar 2, 2025

• ConsensusOPLS

  Public
  HTML

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  GNU General Public License v3.0

  •0•2•0•0•Updated Feb 27, 2025Feb 27, 2025

• NGS-longreads-training

  Public
  Shell

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  Other

  •3•12•9•0•Updated Feb 27, 2025Feb 27, 2025

• sparql-llm

  Public
  🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

  sparqlsparql-query-builderexpasy+ 1llm

  Jupyter Notebook

  •

  MIT License

  •2•28•1•0•Updated Feb 24, 2025Feb 24, 2025

• training-collection

  Public
  Collection of bioinformatics training materials

  Python

  •

  Other

  •183•1k•1•0•Updated Feb 23, 2025Feb 23, 2025

• dsQueryLibraryServer

  Public
  R

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• open-data-registry

  Public
  A registry of publicly available datasets on AWS

  Python

  •

  Apache License 2.0

  •957•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• epinorm

  Public
  Scripts for processing of disease outbreak records as part of the MOOD project.

  Python

  •

  GNU General Public License v3.0

  •0•2•1•0•Updated Feb 7, 2025Feb 7, 2025

• hugo-pathogens-portal

  Public
  Hugo pathogens portal theme

  hugo-themehugopathogens

  HTML

  •

  MIT License

  •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

• glittr

  Public
  A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

  PHP

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  MIT License

  •2•38•3•0•Updated Feb 5, 2025Feb 5, 2025