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    218 repositories

    • aws-batch-jobs

      Public
      Place to store all aws batch jobs
      Python
      •
      Apache License 2.0
      •1•1•0•19•Updated Feb 8, 2025Feb 8, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •68•41•99•95•Updated Feb 8, 2025Feb 8, 2025

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•4•Updated Feb 8, 2025Feb 8, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•191•Updated Feb 8, 2025Feb 8, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•79•Updated Feb 8, 2025Feb 8, 2025

    • audit-service

      Public
      Python
      •
      Apache License 2.0
      •0•5•0•0•Updated Feb 7, 2025Feb 7, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •6•2•0•11•Updated Feb 7, 2025Feb 7, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •17•0•0•4•Updated Feb 7, 2025Feb 7, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•3•Updated Feb 7, 2025Feb 7, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•3•78•Updated Feb 7, 2025Feb 7, 2025

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •0•1•0•8•Updated Feb 7, 2025Feb 7, 2025

    • gen3datamodel

      Public
      Translation layer between the GDC Data Dictionary and psqlgraph
      Python
      •
      Apache License 2.0
      •3•0•0•7•Updated Feb 7, 2025Feb 7, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•180•Updated Feb 7, 2025Feb 7, 2025

    • gen3sdk-python

      Public
      Gen3 SDK for Python
      gen3-lib
      Python
      •
      Apache License 2.0
      •23•14•3•21•Updated Feb 7, 2025Feb 7, 2025

    • tube

      Public
      ETL
      gen3
      Python
      •
      Apache License 2.0
      •9•8•2•8•Updated Feb 7, 2025Feb 7, 2025

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•14•Updated Feb 7, 2025Feb 7, 2025

    • docker-nginx

      Public
      Official NGINX Dockerfiles
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1.7k•0•0•1•Updated Feb 7, 2025Feb 7, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•6•Updated Feb 7, 2025Feb 7, 2025

    • storage-client

      Public
      python package to talk to ceph & cleversafe admin API
      Python
      •
      Apache License 2.0
      •0•0•1•8•Updated Feb 6, 2025Feb 6, 2025

    • BRH-documentation

      Public
      Official Documentation of the BRH Data Mesh
      2•1•0•7•Updated Feb 6, 2025Feb 6, 2025

    • label-boosted-RAG-for-RRG

      Public
      LaB-RAG (Label Boosted Retrieval Augmented Generation): a generalizable framework for captioning using categorical labels as image descriptors.
      Python
      •
      Apache License 2.0
      •1•2•0•6•Updated Feb 6, 2025Feb 6, 2025

    • canine-data-commons

      Public
      Gen3.2 web portal for caninedc.org
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•6•Updated Feb 6, 2025Feb 6, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •45•29•43•14•Updated Feb 6, 2025Feb 6, 2025

    • ecs-ws-sidecar

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•1•Updated Feb 6, 2025Feb 6, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •17•11•22•17•Updated Feb 6, 2025Feb 6, 2025

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•4•Updated Feb 6, 2025Feb 6, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •25•11•2•11•Updated Feb 5, 2025Feb 5, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•0•0•13•Updated Feb 5, 2025Feb 5, 2025

    • orthanc-builder

      Public
      Repo used to build osimis/orthanc docker images, windows installers and OSX packages
      Shell
      •
      GNU Affero General Public License v3.0
      •14•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • pelican

      Public
      Sower jobs for PFB export & import
      gen3gen3-pfbgen3-sower-job
      Python
      •
      Apache License 2.0
      •4•3•0•8•Updated Feb 5, 2025Feb 5, 2025