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    8 repositories

    • proteolethargy

      Public
      Contains code related to Dall'Agnese, Zheng, and Moreno et al. 2024
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • ChemicalGrammar

      Public
      Fork to GitHub repository for Kilgore, Mikhael, and Overholt et al. 2024
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • 2023_Oksuz_Henninger_et_al_TF_RNA

      Public
      Fork to GitHub repository for Oksuz and Henninger et al. 2023
      Jupyter Notebook
      •1•0•0•0•Updated May 26, 2023May 26, 2023

    • ROSE

      Public
      ROSE: RANK ORDERING OF SUPER-ENHANCERS
      Python
      •
      MIT License
      •5•11•1•0•Updated Aug 12, 2022Aug 12, 2022

    • 2020_Henninger_Oksuz_Shrinivas_RNA_feedback

      Public
      Fork to GitHub repository for Henninger, Oksuz, and Shrinivas et al. 2020
      Python
      •2•0•0•0•Updated Feb 16, 2022Feb 16, 2022

    • CRCmapper

      Public
      CRCmapper: map core regulatory circuitry
      Python
      •
      MIT License
      •1•12•3•0•Updated Nov 23, 2020Nov 23, 2020

    • origami

      Public
      Statistical Modeling of ChIA-PET interactions
      chromatinchia-petchromatin-interaction
      Shell
      •
      Other
      •4•1•2•0•Updated Aug 6, 2018Aug 6, 2018

    • fourfold

      Public
      4C-seq data processing and visualization pipeline
      loopingchromatin4c-seq
      Perl
      •
      Other
      •0•3•0•0•Updated Nov 10, 2017Nov 10, 2017