Code

Backports from master#4128

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vicentebolea merged 70 commits intoornladios:release_210ornladios/ADIOS2:release_210from vicentebolea:backports-from-mastervicentebolea/ADIOS2:backports-from-masterCopy head branch name to clipboardApr 3, 2024

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Commits on Apr 3, 2024

• Allow plugin operators to take advantage of the estimated size API

  

  rupertnash

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• Use GetEstimatedSize in encryption operator plugin

  

  rupertnash

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• Added reading of configuration parametyers from ./config/adios2

  

  dmitry-ganyushin

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• WIP. Changed the name of the campaign config file.

  

  dmitry-ganyushin

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• Campaign engine is recognized by file extension.

  

  dmitry-ganyushin

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• do not flush io and adios in read mode. BP5 reader does not like it.

  

  pnorbert

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• Add minmax and shape functions to CampaignReader, so that per-block info is complete when listing campaign archives

  

  pnorbert

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• fixes to still be able to build with gcc 4.8.2. Needed for OLCF DTN nodes

  

  pnorbert

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• format

  

  pnorbert

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• added support to read back from H5T_STRING VARIABLES

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  guj

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• fixed warning

  

  guj

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• clang-format fix

  

  guj

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• Using the correct flag to detect the CUDA backend in ZFP

  

  anagainaru

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• Fix Reord to use MinBlocksInfo where appropriate (ornladios#4071)

  

  eisenhauer

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• - Restructure python API doc in separate main topic, add working example to it.

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• Small typo fixes

  

  anagainaru

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• Adding c bindings for setting and getting the memory space

  

  anagainaru

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• Adding c bindings for getting the shape of a variable based on a memory space

  

  anagainaru

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• Testing code for the C bindings with memory space API

  

  anagainaru

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• Making the Detect memory space available regardless of the backend used

  

  anagainaru

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• consolidate (ornladios#4078)

  

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• Fortran bindings for memory space related functions (ornladios#4077)

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  anagainaru

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• Raise an exception if remote open fails (ornladios#4069)

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• Python: add the same treatment to attributes as to variables before: return scalars (0-dim ndarray) for single value attributes.

  

  pnorbert

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• format

  

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• format more

  

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• - Python: fix for scalar reading. If a global value has 1 step (i.e. always in streaming), read returns a 0-dim numpy array (single value). If the variable has multiple steps (only in ReadRandomAcc…

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• Add test for single string attribute vs string array attribute with a single element

  

  pnorbert

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• Update documentation for 2.10 changes to the GPU-backend (ornladios#4083)

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  anagainaru

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• BlockIndex.Evaluate() made branch based on BP5 vs BP4. To support CampaignReader engine, decision is made based on whether MinBlocksInfo is supported by engine.

  

  pnorbert

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• Fix links to tutorial materials (ornladios#4086)

  

  anagainaru

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• adios2_define_derived_variable C/Fortran API. C is compiled conditionally, like the C++ API. The Fortran function is always available, it will print a WARNING if derived variable is not supported. …

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• Completely hide derived variables in C API if not enabled. Print warning inside Fortran F2C function.

  

  pnorbert

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• Add setup for Aurora (load adios2 as e4s package)

  

  pnorbert

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• Do not create adios-campaign/ unless there is something to record

  

  pnorbert

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• Bison 3.8 Parser (ornladios#4062)

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• WIP: Make Fortran tests fail with a non-zero exit code (ornladios#4097)

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• Fix typo in fortran.rst (ornladios#4102)

  

  JamieJQuinn

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• ci: add ccache job summary (ornladios#4101)

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• Fix static blosc2 build (ornladios#4093)

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• Don't run derived test in MPI mode, it's not written for that (ornladios#4104)

  

  eisenhauer

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• dill 2024-03-12 (ebc98c4d) (ornladios#4091)

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• Update campaign manager script to handle config file, time in nanosecond format, and avoiding conflict when updating database

  

  pnorbert

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• flake8 fixes

  

  pnorbert

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• - Only add campaign store to file name if that is not absolute path

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• Don't use assert() in tests (ornladios#4108)

  

  eisenhauer

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• Warnings (ornladios#4113)

  

  eisenhauer

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• EVpath upstream to make NO_RDMA more robust (ornladios#4116)

  

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• Different names for MPI and Serial tests (ornladios#4118)

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• cmake: add sqlite3 and zlib dep in adios2 cmake pkg

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• Add support for user options in ~/.config/adios2/adios2.yaml

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• Fix compiler error

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• do not include unistd.h

  

  pnorbert

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• change a long variable to int64_t to avoid size confusion on windows

  

  pnorbert

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• Use yaml parser in campaign manager python script

  

  pnorbert

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• bug fix: the order of entries in bpdataset table is undefined but the campaign data reader relied on calculating the index as if it was sorted by the insertion order. Use a map instead to store the…

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  pnorbert

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• rename remote_server to adios2_remote_server

  

  pnorbert

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• Use the name of the campaign in the cache path to avoid name collision

  

  pnorbert

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• clang-format

  

  pnorbert

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• fix remote server test, use the new binary name

  

  pnorbert

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• used size_t not int for map indexing to avoid type conversion

  

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• - set ACA version to 0.1

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• Initialize ADIOS::m_UserOption before tentaively calling ProcessUserConfig()

  

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• Add a random string to each database name to avoid collision when running multiple applications in the same directory at the same time. Fixes issues with CI that runs ctest in parallel

  

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• Add attribute support to campaign

  

  pnorbert

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• update doc

  

  pnorbert

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• DataPlane Configuration changes (ornladios#4121)

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• Add -f file1 [file2...] option to process adios files from a list instead of a campaign recording

  

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• Add the CURL function to derived variables (ornladios#4114)

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• Setting the derived variable support OFF by default

  

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