Advanced convert to Pandas for hierarchcial DynamicTables (#13)

* Added HierarchicalDynamicTableMixin class * Added example illustrating the use of HierarchicalDynamicTableMixin * Support construction of MultiIndex on the columns when converting to a DataFrame * Update conversion to hierarchical table to move id of lowest table to the main columns * Add helper functions to the tests to create a more realistic test file to evaluate query * Added work-in-progress draft for query notebook * Update tests to work with changes in HDMF for pandas seletions on DynamicTables * Fix #12 . Return index of the row being added to a table * Fix #14 . Declare filtering attribute of intracellular ephys as deprecated
oruebel · Nov 19, 2019 · 82fa61a · 82fa61a
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diff --git a/spec/ndx-icephys-meta.extensions.yaml b/spec/ndx-icephys-meta.extensions.yaml
@@ -143,6 +143,14 @@ groups:
     groups:
     - name: intracellular_ephys
       doc: expand definition from NWBFile
+      datasets:
+      - name: filtering
+        dtype: text
+        doc: '[DEPRECATED] Use IntracellularElectrode.filtering instead. Description
+          of filtering used. Includes filtering type and parameters, frequency fall-off,
+          etc. If this changes between TimeSeries, filter description should be stored
+          as a text attribute for each TimeSeries.'
+        quantity: '?'
       groups:
       - name: intracellular_recordings
         neurodata_type_inc: IntracellularRecordings

diff --git a/src/pynwb/examples/icephys_meta_query_example.ipynb b/src/pynwb/examples/icephys_meta_query_example.ipynb