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Advanced convert to Pandas for hierarchcial DynamicTables #13

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merged 15 commits into from
Nov 19, 2019
Merged

Advanced convert to Pandas for hierarchcial DynamicTables #13

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3159027
Added HierarchicalDynamicTableMixin class
oruebel Nov 8, 2019
faac0ca
Added example illustrating the use of HierarchicalDynamicTableMixin
oruebel Nov 8, 2019
f0c23b8
Support construction of MultiIndex on the columns when converting to …
oruebel Nov 8, 2019
02ad0c9
Update conversion to hierarichal table to move id of lowest table to …
oruebel Nov 8, 2019
9ac20d3
Fix bug in convert to pandas when reading from HDF5
oruebel Nov 10, 2019
f94713c
Add helper functions to the tests to create a more realistic test fil…
oruebel Nov 10, 2019
85ceedd
Updated rerun notebooks
oruebel Nov 10, 2019
377546b
Updated the test file generator to allow some randomization of data
oruebel Nov 10, 2019
a8b747b
Added work-in-progress draft for query notebook
oruebel Nov 10, 2019
d48de10
Saving progress
oruebel Nov 13, 2019
f83f9d9
Update tests to work with changes in HDMF for pandas seletions on Dyn…
oruebel Nov 13, 2019
68a2b63
Fix #12 . Return index of the row being added to a table
oruebel Nov 13, 2019
68193e4
Fix #12 . Return index of the row being added to a table
oruebel Nov 13, 2019
8e56691
Fix #14 . Declare filtering attribute of intracellular ephys as depre…
oruebel Nov 13, 2019
261fb32
Rerun and update examples
oruebel Nov 19, 2019
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8 changes: 8 additions & 0 deletions spec/ndx-icephys-meta.extensions.yaml
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Expand Up @@ -143,6 +143,14 @@ groups:
groups:
- name: intracellular_ephys
doc: expand definition from NWBFile
datasets:
- name: filtering
dtype: text
doc: '[DEPRECATED] Use IntracellularElectrode.filtering instead. Description
of filtering used. Includes filtering type and parameters, frequency fall-off,
etc. If this changes between TimeSeries, filter description should be stored
as a text attribute for each TimeSeries.'
quantity: '?'
groups:
- name: intracellular_recordings
neurodata_type_inc: IntracellularRecordings
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2,601 changes: 2,601 additions & 0 deletions src/pynwb/examples/icephys_meta_query_example.ipynb
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