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#20 and some vulnerabilities resolved #47

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merged 34 commits into from
Oct 24, 2023
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@DaBeIDS DaBeIDS commented Oct 24, 2023

This PR solves:

Boto3 needs Python >= 3.8 from december on #20 <-- We upgraded to Python 3.8 (a further update will be done in another round)

On top we resolved 5 dependabot warnings and removed version fixes (as far as possible).

Note that Flask and Werkzeuge are fixed due to the farm package. We have to switch to haystack to solve that.

DaBeIDS and others added 30 commits October 22, 2023 21:03
* Update Dockerfile

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* Update kpi_mapping.py

root folder has access right issues and hence we have to change to another folder

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* Update extraction_server.py

Updated curation step for S3

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* Update Dockerfile

had to change mode of code folder to ensure accessibility

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* Update extraction_server.py

Added create directory to empty "folders"

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* Init pytest and creating test cases for upcoming refactoring

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* Ongoing creation of test cases

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* Ongoing creation of test cases

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* Ongoing creation and modification of test cases

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* Ongoing creation of test cases

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* Reset branch to restore old status

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* Adding test cases for save_train_info

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* Finished added test cases for save_train_info

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* Adding test cases for run_router function

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* Backup

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* Adding first test cases for train_on_pdf script

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* Ongoing test creation for train_on_pdf function

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* Ongoing creation of tests

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* Ongoing test creation

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* Ongoing creation of test cases

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* Ongoing test creation

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* Finishing test cases for train_on_pdf script

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* Adding missing file in test folder

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* Create .gitignore and protect credentials from being leaked

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* Update README.md with status

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* Update train_on_pdf.py

Turn back wrong commit

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* Update inference_server.py

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* Update inference_server.py

Undo previous push (wrong branch)

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* Feature/2023.04 os test (#12)

* Update Dockerfile

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* Update settings.yaml

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* Update entry.sh

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* Delete entry.sh

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* Update train_on_pdf.py

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* Update settings.yaml

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* Update settings.yaml

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* Create requirements.txt

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update infer_on_pdf.py

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* Update requirements.txt

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* Update requirements.txt

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Add a default folder for the models

* Update DOCKER_TEST

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Add files via upload

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* Update Dockerfile

Added s3-communication.py file as a wrapper to communicate with s3 buckets

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* Update DOCKER_TEST file for s3 communication

* Update requirements.txt in TEST_SETUP

* Adding user-friendly shell /bin/bash

* Adding VS Code folders for remote access

* Update train_on_pdf.py

First step to s3 connection of main_terminal

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Create s3_settings.yaml

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* Update s3_settings.yaml

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* Update train_on_pdf.py

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* Update Dockerfile

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update Dockerfile

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* Update extraction_server.py

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* Update s3_settings.yaml

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* Update extraction_server.py

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* Update kpi_mapping.py

root folder has access right issues and hence we have to change to another folder

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* Update extraction_server.py

Updated curation step for S3

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* Update Dockerfile

had to change mode of code folder to ensure accessibility

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* Update extraction_server.py

Added create directory to empty "folders"

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* Update Dockerfile

Add s3 communication to model docker

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* Update Dockerfile

Add folder data and models to the models docker

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* Update config_farm_train.py

Adjust file path to be more generic for training folder

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* Update inference_server.py

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* Update Dockerfile

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* Update inference_server.py

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* Update settings.yaml

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* Update settings.yaml

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* Update inference_server.py

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* Update inference_server.py

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* Update train_on_pdf.py

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* Update inference_server.py

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* Update inference_server.py

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* Update inference_server.py

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* Update settings.yaml

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* Update settings.yaml

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* Update inference_server.py

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* Update extraction_server.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update inference_server.py

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* Update inference_server.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update inference_server.py

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* Update infer_on_pdf.py

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* Update train_on_pdf.py

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* Update infer_on_pdf.py

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update rb_server.py

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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---------

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Co-authored-by: ktj8l89 <tobias.watzel@investmentdataservices.com>
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* Feature/2023.04 os test (#14)

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update rb_server.py

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* Update infer_on_pdf.py

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* Feature/2023.07 os test refactor test cases (#13)

* Init pytest and creating test cases for upcoming refactoring

* Ongoing creation of test cases

* Ongoing creation of test cases

* Ongoing creation and modification of test cases

* Ongoing creation of test cases

---------

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Co-authored-by: ktj8l89 <tobias.watzel@investmentdataservices.com>

---------

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Co-authored-by: ktj8l89 <tobias.watzel@investmentdataservices.com>
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* Feature/2023.04 os test (#16)

* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update requirements.txt

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* Update requirements.txt

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update requirements.txt

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Add files via upload

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Delete entry.sh

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update requirements.txt

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* Update requirements.txt

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update requirements.txt

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Add files via upload

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Delete entry.sh

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update entry.sh

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Add files via upload

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* Add files via upload

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* Delete data_extractor/data/TEST directory

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* Add files via upload

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* Delete data_extractor/data/TEST/interim/rb/work directory

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* Add files via upload

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* Delete DOCKER_TEST

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* Add files via upload

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* Update train_on_pdf.py

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* Update settings.yaml

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* Update infer_on_pdf.py

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* Update settings.yaml

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* Create requirements.txt

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
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* Update DOCKER_TEST

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* Update entry.sh

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Delete requirements.txt

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Delete entry.sh

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* Add files via upload

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
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* Update train_on_pdf.py

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* Update settings.yaml

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* Update settings.yaml

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* Update settings.yaml

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* Update DOCKER_TEST

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
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* Create requirements.txt

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* Update requirements.txt

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update requirements.txt

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* Update infer_on_pdf.py

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* Update requirements.txt

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* Update requirements.txt

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Add a default folder for the models

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Add files via upload

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* Update Dockerfile

Added s3-communication.py file as a wrapper to communicate with s3 buckets

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* Update DOCKER_TEST file for s3 communication

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* Update requirements.txt in TEST_SETUP

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* Adding user-friendly shell /bin/bash

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* Adding VS Code folders for remote access

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Create s3_settings.yaml

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* Update s3_settings.yaml

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* Update train_on_pdf.py

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* Update Dockerfile

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update extraction_server.py

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* Update Dockerfile

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* Update extraction_server.py

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* Update s3_settings.yaml

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* Update extraction_server.py

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* Update kpi_mapping.py

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* Update extraction_server.py

Updated curation step for S3

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* Update Dockerfile

had to change mode of code folder to ensure accessibility

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* Update extraction_server.py

Added create directory to empty "folders"

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* Update Dockerfile

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* Update Dockerfile

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* Update config_farm_train.py

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* Update inference_server.py

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* Update Dockerfile

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* Update requirements.txt

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* Update Dockerfile

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* Update inference_server.py

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* Update settings.yaml

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* Update settings.yaml

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* Update inference_server.py

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* Update kpi_mapping.py

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* Update inference_server.py

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* Update inference_server.py

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* Update train_on_pdf.py

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* Update kpi_mapping.py

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* Update inference_server.py

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* Update inference_server.py

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* Update inference_server.py

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* Update settings.yaml

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* Update settings.yaml

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* Update inference_server.py

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* Update extraction_server.py

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* Update extraction_server.py

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* Update train_on_pdf.py

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* Update train_on_pdf.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update inference_server.py

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* Update settings.yaml

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* Update inference_server.py

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* Update infer_on_pdf.py

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* Update infer_on_pdf.py

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* Update inference_server.py

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* Update infer_on_pdf.py

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* Update train_on_pdf.py

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* Update infer_on_pdf.py

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* Update Dockerfile

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* Update Dockerfile

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* Update Dockerfile

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* Update rb_server.py

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* Update infer_on_pdf.py

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update DOCKER_TEST

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update requirements.txt

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* Update Dockerfile

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* Update rb_server.py

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* Update rb_server.py

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* Update infer_on_pdf.py

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* Update rb_server.py

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* Update Dockerfile

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* Update rb_server.py

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* Update rb_server.py

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* Update infer_on_pdf.py

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* Update rb_server.py

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* Update infer_on_pdf.py

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* Feature/2023.07 os test refactor test cases (#13)

* Init pytest and creating test cases for upcoming refactoring

* Ongoing creation of test cases

* Ongoing creation of test cases

* Ongoing creation and modification of test cases

* Ongoing creation of test cases

---------

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Co-authored-by: ktj8l89 <tobias.watzel@investmentdataservices.com>
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* Update Dockerfile

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* Update Dockerfile

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* Added a coordinator docker and smaller changes

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* Extraction Dockerfile adjusted

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* Extraction Dockerfile adjusted

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* Extraction Dockerfile adjusted

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* Coordinator Dockerfile adjusted

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* Pyyaml added to requirements_coordinator

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* Pandas added to requirements_coordinator

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* boto3 added to requirements_coordinator

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* Openpyxl added to requirements_coordinator

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* Added folder permissions

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* Missing folder in infer_on_pdf.py

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* Update the visitor container and some small improvements

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* Path change in docker_visitor

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* Typo in filename

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* PyYaml missing in requirements file

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* Refactoring and small changes

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* Added different default runs for main and test branch

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* Small issues

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* Create directory and Small adjustments for PEP

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* Changed the import settings for the visitor and coordinator

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* Updated Docker-File

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---------

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Co-authored-by: ktj8l89 <tobias.watzel@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
…d encrypted pdfs

Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: Demir <ISMAIL.DEMIR@INVESTMENTDATASERVICES.COM>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: Demir <ISMAIL.DEMIR@INVESTMENTDATASERVICES.COM>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
Unnecessary requirements

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Requirements Clean Up 

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Deleted fixed versions to test

Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
DaBeIDS and others added 4 commits October 23, 2023 21:11
Signed-off-by: DaBeIDS <90916810+DaBeIDS@users.noreply.github.com>
Signed-off-by: VEIY82L <david.besslich@investmentdataservices.com>
@DaBeIDS DaBeIDS merged commit 9036767 into os-climate:main Oct 24, 2023
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3 participants