Debug to install_dependencies.sh

.gitignore

@@ -105,3 +105,4 @@ venv.bak/
 
 # filemanager config
 filemanager/config.txt
+filemanager_data

install_dependencies.sh

@@ -7,7 +7,7 @@
 # the current directory.
 
 INSTALL_DIR="${1:-thisdir}"
-if [ $INSTALL_DIR = 'thisdir' ]
+if [ $INSTALL_DIR == 'thisdir' ]
 then
   INSTALL_DIR=$(pwd)
 fi
@@ -65,7 +65,7 @@ echo 'Installing cmsdbldr...'
 
 # Install and auto-add to PATH
 git clone https://github.com/valdasraps/cmsdbldr.git
-if [ $RCPATH == 1]
+if [ $RCPATH == 1 ]
 then
   if [ $machine = "Mac" ]
   then
@@ -98,7 +98,7 @@ then
 
   # get (version-dependent) directory name
   export ICDIR=$(find instantclient_* -maxdepth 0 -type d)
-  if [ $RCPATH == 1]
+  if [ $RCPATH == 1 ]
   then
     # Add to PATH via adding a new line to .bash_profile
     echo "export PATH=${INSTALL_DIR}/${ICDIR}:\$PATH" >> ~/.bash_profile
@@ -116,7 +116,7 @@ then
 
   # get version
   export ICDIR=$(find instantclient_* -maxdepth 0 -type d)
-  if [ $RCPATH == 1]
+  if [ $RCPATH == 1 ]
   then
     # Add to PATH via adding a new line to .bash_profile
     echo "export PATH=${INSTALL_DIR}/${ICDIR}:\$PATH" >> ~/.bashrc
@@ -144,7 +144,8 @@ then
   # Add to PATH via setx (WARNING: Requires Windows 7 or later, currently untested)
   # setx /M path "%path%;"$INSTALL_DIR'\'$ICDIR
   # FOR NOW:  Attempt to add to bashrc
-  if [ $RCPATH == 1]
+  if [ $RCPATH == 1 ]
+  then
     echo "export PATH=${INSTALL_DIR}/${ICDIR}:\$PATH" >> ~\.bashrc
     echo "export INSTANT_CLIENT_HOME=${INSTALL_DIR}/${ICDIR}" >> ~\.bashrc
   fi

user_scripts/00.linux_serve_setup/README.md

@@ -0,0 +1,7 @@
+# Setup Linux Server.
+## Installation
+* Install miniconda from website
+* Install dependent packages in conda virtual environment
+`conda create --name sharedUI --file sharedUI.requirements.txt python=3.9`
+`conda activate sharedUI`
+* Create a script for loading environment (optional)

user_scripts/00.linux_serve_setup/sharedUI.requirements.txt

@@ -0,0 +1,82 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+@EXPLICIT
+https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda
+https://repo.anaconda.com/pkgs/main/linux-64/blas-1.0-mkl.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ca-certificates-2023.05.30-h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ld_impl_linux-64-2.38-h1181459_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libstdcxx-ng-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/noarch/tzdata-2023c-h04d1e81_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgomp-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/_openmp_mutex-5.1-1_gnu.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/expat-2.4.9-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/giflib-5.2.1-h5eee18b_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/icu-58.2-he6710b0_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/jpeg-9e-h5eee18b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/lerc-3.0-h295c915_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libdeflate-1.17-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libffi-3.4.4-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libuuid-1.41.5-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libwebp-base-1.2.4-h5eee18b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxcb-1.15-h7f8727e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/lz4-c-1.9.4-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ncurses-6.4-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/nspr-4.35-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/openssl-3.0.10-h7f8727e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pcre-8.45-h295c915_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/tbb-2021.8.0-hdb19cb5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/xz-5.4.2-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.2.13-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/glib-2.69.1-he621ea3_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/intel-openmp-2023.1.0-hdb19cb5_46305.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libedit-3.1.20221030-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libevent-2.1.12-hdbd6064_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libllvm10-10.0.1-hbcb73fb_5.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libpng-1.6.39-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxml2-2.9.14-h74e7548_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/readline-8.2-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/tk-8.6.12-h1ccaba5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/zstd-1.5.5-hc292b87_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/dbus-1.13.18-hb2f20db_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/freetype-2.12.1-h4a9f257_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gstreamer-1.14.1-h5eee18b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/krb5-1.20.1-h143b758_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libclang-10.0.1-default_hb85057a_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libtiff-4.5.0-h6a678d5_2.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxkbcommon-1.0.1-hfa300c1_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libxslt-1.1.35-h4e12654_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl-2023.1.0-h213fc3f_46343.conda
+https://repo.anaconda.com/pkgs/main/linux-64/sqlite-3.41.2-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/fontconfig-2.14.1-h52c9d5c_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/gst-plugins-base-1.14.1-h6a678d5_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libpq-12.15-hdbd6064_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libwebp-1.2.4-h11a3e52_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/nss-3.89.1-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/python-3.9.17-h955ad1f_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/cx_oracle-8.3.0-py39h7f8727e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/exceptiongroup-1.0.4-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/iniconfig-1.1.1-pyhd3eb1b0_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/markupsafe-2.1.1-py39h7f8727e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl-service-2.4.0-py39h5eee18b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/packaging-23.0-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pluggy-1.0.0-py39h06a4308_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ply-3.11-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/qt-main-5.15.2-h327a75a_7.conda
+https://repo.anaconda.com/pkgs/main/linux-64/setuptools-68.0.0-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/toml-0.10.2-pyhd3eb1b0_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/tomli-2.0.1-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/wheel-0.38.4-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/jinja2-3.1.2-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/numpy-base-1.25.2-py39hb5e798b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pip-23.2.1-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pytest-7.4.0-py39h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/qt-webengine-5.15.9-hd2b0992_4.conda
+https://repo.anaconda.com/pkgs/main/linux-64/sip-6.6.2-py39h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pyqt5-sip-12.11.0-py39h6a678d5_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/qtwebkit-5.212-h4eab89a_4.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pyqt-5.15.7-py39h6a678d5_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl_fft-1.3.6-py39h417a72b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/mkl_random-1.2.2-py39h417a72b_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/numpy-1.25.2-py39h5f9d8c6_0.conda

user_scripts/01.windows_ssh_connection/AccessDatabase.ps1

@@ -0,0 +1,21 @@
+$REMOTE_USER = "ntuuser"
+
+
+$env:DISPLAY = "localhost:0"
+$width = 80
+$height = 6
+
+$host.UI.RawUI.WindowSize = New-Object System.Management.Automation.Host.Size($width,$height)
+
+
+$X11Program = "C:\Program Files\VcXsrv\xlaunch.exe"
+
+if (Test-Path -Path $X11Program -PathType Leaf) {
+  Start-Process $X11Program
+} else {
+  Write-Host '--------------------------- WARNING ---------------------------------------------'
+  Write-Host '-- Default X11 program not found in computer, you need to execute it manually. --'
+  Write-Host '---------------------------------------------------------------------------------'
+}
+ssh -Y $REMOTE_USER@hep10.phys.ntu.edu.tw 'source gotoworkspace/01.SharedUI.sh && python /data1/ltsai/workspace/git/SharedUI/mainUI.py'
+Pause

user_scripts/01.windows_ssh_connection/README.md

@@ -0,0 +1,5 @@
+# Access Database from Windows PC
+* Install X11 server
+Install [VcxSrv](https://sourceforge.net/projects/vcxsrv/)
+* Connect to Linux Server
+Download AccessDatabase.ps1 and launch the script by right click \- execute.