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@leightonpayne leightonpayne released this 28 Sep 03:11
· 54 commits to master since this release
v1.1.0
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PADLOC-DB release v1.1.0

About

PADLOC-DB is a curated database of HMMs for prokaryotic antiviral defence system proteins, and models describing the genetic architecture of these systems. These files are used by PADLOC to locate antiviral defence systems in prokaryotic genomes. They can otherwise be used independently with HMMER and related software.

The latest version of this database is installed when running padloc --db-update, specifc versions can be installed using padloc --db-install <version>.

What's new

This is the second release of PADLOC-DB. It greatly expands upon the previous release through the addition of HMMs and system models for 27 CRISPR-Cas subtypes and 26 diverse types of defence systems from Gao et al., 2020. One HMM was deprecated (see hmm/deprecated/notes.txt).

What's included

padloc-db
├── hmm/                        <- Defence protein HMMs.
├── sys/                        <- Defence system models.
├── hmm_meta.txt                <- Metadata for HMMs.
├── sys_meta.txt                <- Metadata for system models.
├── README.md                   <- Information regarding metadata fields.
├── RELEASE.md                  <- This file.
└── LICENSE                     <- Copyright information.

Release record

Release Date HMMs Classifications
v1.1.0 28/09/2021 2223 97
v1.0.0 05/08/2021 915 36
Assets 2
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