Skip to content

v1.2.0
Compare
Choose a tag to compare
@leightonpayne leightonpayne released this 10 Nov 23:34
· 41 commits to master since this release
v1.2.0
bef66fe

PADLOC-DB release v1.2.0

About

PADLOC-DB is a curated database of HMMs for prokaryotic antiviral defence system proteins, and models describing the genetic architecture of these systems. These files are used by PADLOC to locate antiviral defence systems in prokaryotic genomes. They can otherwise be used independently with HMMER and related software.

The latest version of this database is installed when running padloc --db-update, specifc versions can be installed using padloc --db-install <version>.

What's new

This is the third release of PADLOC-DB. It adds 'classic' abortive infection and bacteriophage exclusion systems, plus the recently discovered BstA system from Owen et al., 2021.

What's included

padloc-db
├── hmm/                        <- Defence protein HMMs.
├── sys/                        <- Defence system models.
├── hmm_meta.txt                <- Metadata for HMMs.
├── sys_meta.txt                <- Metadata for system models.
├── README.md                   <- Information regarding metadata fields.
├── RELEASE.md                  <- This file.
└── LICENSE                     <- Copyright information.

Release record

Release Date HMMs Classifications
v1.2.0 11/11/2021 2360 126
v1.1.0 28/09/2021 2223 97
v1.0.0 05/08/2021 915 36
Assets 2
Loading