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@leightonpayne leightonpayne released this 23 Apr 03:12
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v1.4.0
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PADLOC-DB release v1.4.0

About

PADLOC-DB is a curated database of HMMs for prokaryotic antiviral defence system proteins, and models describing the genetic architecture of these systems. These files are used by PADLOC to locate antiviral defence systems in prokaryotic genomes. They can otherwise be used independently with HMMER and related software.

The latest version of this database is installed when running padloc --db-update, specifc versions can be installed using padloc --db-install <version>.

What's new

This release of PADLOC-DB adds RM systems, new systems from Rousset et al. (https://doi.org/10.1016/j.chom.2022.02.018), darTG from LeRoux et al. (https://doi.org/10.1101/2021.09.27.462013), Gasdermins from Johnson et al. (https://doi.org/10.1126/science.abj8432), and spbK from Johnson et al. (https://doi.org/10.1371/journal.pgen.1010065).

What's included

padloc-db
├── hmm/                        <- Defence protein HMMs.
├── sys/                        <- Defence system models.
├── hmm_meta.txt                <- Metadata for HMMs.
├── sys_meta.txt                <- Metadata for system models.
├── README.md                   <- Information regarding metadata fields.
├── RELEASE.md                  <- This file.
└── LICENSE                     <- Copyright information.

Release record

Release Date HMMs Classifications
v1.4.0 23/04/2022 3824 210
v1.3.0 14/02/2022 2974 181
v1.2.0 11/11/2021 2360 126
v1.1.0 28/09/2021 2223 97
v1.0.0 05/08/2021 915 36
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