v1.4.0
PADLOC-DB release v1.4.0
About
PADLOC-DB is a curated database of HMMs for prokaryotic antiviral defence system proteins, and models describing the genetic architecture of these systems. These files are used by PADLOC to locate antiviral defence systems in prokaryotic genomes. They can otherwise be used independently with HMMER and related software.
The latest version of this database is installed when running padloc --db-update
, specifc versions can be installed using padloc --db-install <version>
.
What's new
This release of PADLOC-DB adds RM systems, new systems from Rousset et al. (https://doi.org/10.1016/j.chom.2022.02.018), darTG from LeRoux et al. (https://doi.org/10.1101/2021.09.27.462013), Gasdermins from Johnson et al. (https://doi.org/10.1126/science.abj8432), and spbK from Johnson et al. (https://doi.org/10.1371/journal.pgen.1010065).
What's included
padloc-db
├── hmm/ <- Defence protein HMMs.
├── sys/ <- Defence system models.
├── hmm_meta.txt <- Metadata for HMMs.
├── sys_meta.txt <- Metadata for system models.
├── README.md <- Information regarding metadata fields.
├── RELEASE.md <- This file.
└── LICENSE <- Copyright information.
Release record
Release | Date | HMMs | Classifications |
---|---|---|---|
v1.4.0 | 23/04/2022 | 3824 | 210 |
v1.3.0 | 14/02/2022 | 2974 | 181 |
v1.2.0 | 11/11/2021 | 2360 | 126 |
v1.1.0 | 28/09/2021 | 2223 | 97 |
v1.0.0 | 05/08/2021 | 915 | 36 |