Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BUG: SparseDataFrame from scipy.sparse.dok_matrix returns incorrect dataframe in python 2.7 #16179

Closed
keitakurita opened this issue Apr 30, 2017 · 3 comments · Fixed by #16191
Labels
Bug Sparse Sparse Data Type
Milestone

Comments

@keitakurita
Copy link
Contributor

keitakurita commented Apr 30, 2017

Code Sample, a copy-pastable example if possible

Python 2.7

>>> import sys
>>> sys.version
'2.7.13 |Continuum Analytics, Inc.| (default, Dec 20 2016, 23:05:08) \n[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)]'
>>> import numpy as np
>>> import scipy.sparse
>>> a = np.arange(1, 5).reshape(2,2)
>>> a
array([[1, 2],
       [3, 4]])
>>> spm = scipy.sparse.dok_matrix(a)
>>> spm
<2x2 sparse matrix of type '<type 'numpy.int64'>'
	with 4 stored elements in Dictionary Of Keys format>
>>> pd.SparseDataFrame(a)
   0  1
0  1  2
1  3  4
>>> pd.SparseDataFrame(spm)
   0  1
0  3  2
1  1  4

Python 3.6

>>> import sys
>>> sys.version
'3.6.1 |Continuum Analytics, Inc.| (default, Mar 22 2017, 19:25:17) \n[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)]'
>>> a = np.arange(1, 5).reshape(2,2)
>>> spm = scipy.sparse.dok_matrix(a)
>>> pd.SparseDataFrame(spm)
   0  1
0  1  2
1  3  4

Problem description

Initialization of SparseDataFrame with scipy.sparse.dok_matrix returns a different result from direct initialization from np.ndarray only in Python 2.7. This is inconsistent and unestimated behavior.
The scipy.sparse.dia_matrix shows similar buggy behavior.

Expected Output

>>> spm = scipy.sparse.dok_matrix(np.arange(1, 5).reshape(2,2))
>>> pd.SparseDataFrame(spm)
   0  1
0  1  2
1  3  4

Output of pd.show_versions()

INSTALLED VERSIONS ------------------ commit: 075eca1 python: 2.7.13.final.0 python-bits: 64 OS: Darwin OS-release: 16.5.0 machine: x86_64 processor: i386 byteorder: little LC_ALL: None LANG: ja_JP.UTF-8 LOCALE: None.None

pandas: 0.20.0rc1+29.g075eca1
pytest: 3.0.7
pip: 9.0.1
setuptools: 27.2.0
Cython: 0.25.2
numpy: 1.12.1
scipy: 0.18.1
xarray: None
IPython: None
sphinx: None
patsy: None
dateutil: 2.6.0
pytz: 2017.2
blosc: None
bottleneck: None
tables: None
numexpr: None
feather: None
matplotlib: None
openpyxl: None
xlrd: None
xlwt: None
xlsxwriter: None
lxml: None
bs4: None
html5lib: None
sqlalchemy: None
pymysql: None
psycopg2: None
jinja2: None
s3fs: None
pandas_gbq: None
pandas_datareader: None

@TomAugspurger
Copy link
Contributor

Do you have the same pandas and scipy versions on both?

@keitakurita
Copy link
Contributor Author

Yes, I have scipy version 0.18.1 installed on both environments (Python 3.6 and Python 2.7)

@jreback
Copy link
Contributor

jreback commented May 1, 2017

cc @kernc

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Bug Sparse Sparse Data Type
Projects
None yet
Development

Successfully merging a pull request may close this issue.

3 participants