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BLD: add optional dependencies as extras_require in setup.py #47336

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merged 159 commits into from
Oct 21, 2022
Merged

BLD: add optional dependencies as extras_require in setup.py #47336

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7cd25a2
add-recommended-dependencies-as-extras_require-in-setup.cfg
JMBurley Jun 13, 2022
eab49c7
Update v1.4.3.rst
JMBurley Jun 13, 2022
b6438c6
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jun 13, 2022
645f046
double backtick code in rst
JMBurley Jun 13, 2022
7eb6a64
Merge branch 'add-recommended-dependencies-as-extras_require-in-setup…
JMBurley Jun 13, 2022
897d98d
rebundle under extras_require `recommended`
JMBurley Jun 16, 2022
3cbcba6
[options.extras_require] bundled dependencies by featureset
JMBurley Jul 12, 2022
80842b1
note: [options.extras_require] bundled dependencies by featureset
JMBurley Jul 12, 2022
3ea0779
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 12, 2022
0027238
Update setup.cfg
JMBurley Jul 12, 2022
9f2beee
add adlfs for azure to `access data in cloud`
JMBurley Jul 12, 2022
331423d
fix extras_require: PyTables is actually `tables` on PyPi
JMBurley Jul 12, 2022
afc89a0
Update setup.cfg
JMBurley Jul 12, 2022
1a86f0c
add `all` option to [options.extras_require]
JMBurley Jul 13, 2022
d0d87ea
moved changelog to 1.4.4 as 1.4.3 released while this PR was stalled
JMBurley Jul 14, 2022
1086835
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 14, 2022
98f4b12
Updated to 1.5.0 compliance
JMBurley Jul 14, 2022
48c1f87
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 18, 2022
aab9546
simplify sql option names
JMBurley Jul 18, 2022
eb461ac
extras rename: recommended -> performance
JMBurley Jul 18, 2022
1a277b5
remove azure
JMBurley Jul 18, 2022
f39af49
align with actions-38-minimum_versions.yaml
JMBurley Jul 18, 2022
f2238be
Pandas -> pandas in doc
JMBurley Jul 18, 2022
4c10b07
extras rename: s3 -> aws
JMBurley Jul 18, 2022
ba22552
extras rename: table -> output_formatting
JMBurley Jul 18, 2022
c0ea86b
Merge branch 'add-recommended-dependencies-as-extras_require-in-setup…
JMBurley Jul 18, 2022
2093dac
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 18, 2022
601b3af
bug: `>=` not `=`
JMBurley Jul 18, 2022
afda3dc
Apply suggestions from code review
JMBurley Jul 19, 2022
ab41dfb
align 1.5.0.rst to latest extras_require updates
JMBurley Jul 19, 2022
9b9e7b6
1.5.0.rst example updated to use valid extras
JMBurley Jul 19, 2022
eb0d7ae
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 19, 2022
096bef9
add optional dep mgmt instructions to install.rst
JMBurley Jul 20, 2022
4f7d9d1
lint scipy optional import
JMBurley Jul 21, 2022
cf01608
Apply suggestions from code review
JMBurley Jul 21, 2022
b081521
detailed extras guidance in install.rst
JMBurley Jul 21, 2022
87006bb
_optional.py note to keep track of setup.cfg
JMBurley Jul 21, 2022
404b215
bug: indent after bullet in install.rst
JMBurley Jul 21, 2022
e99e97d
remove numba from computation extra.
JMBurley Jul 21, 2022
16310c2
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Jul 21, 2022
99f3125
Backport PR #48197 on branch 1.5.x (DOC: Cleanup 1.5 whatsnew) (#48228)
meeseeksmachine Aug 24, 2022
ef3d6b0
Backport PR #48232 on branch 1.5.x (CI: Ensure jobs run on 1.5.x bran…
meeseeksmachine Aug 25, 2022
5ae1898
Backport PR #48180 on branch 1.5.x (CI: Switch to large for circleci)…
meeseeksmachine Aug 25, 2022
992cfcd
Backport PR #48245 on branch 1.5.x (CI: Skip test_round_sanity tests …
meeseeksmachine Aug 25, 2022
9b4eb54
Backport PR #48240 on branch 1.5.x (Fix mypy erroring on backport bra…
meeseeksmachine Aug 25, 2022
7313da5
Backport PR #48215 on branch 1.5.x (REGR: properly update DataFrame c…
meeseeksmachine Aug 26, 2022
f46704c
Backport PR #48272 on branch 1.5.x (CI: Require s3fs greater than min…
meeseeksmachine Aug 29, 2022
97cf8e2
Backport PR #48299 on branch 1.5.x (Bump s3fs to 2021.08.00) (#48305)
meeseeksmachine Aug 30, 2022
3ca5773
Backport PR #48027 on branch 1.5.x (ENH: Support masks in groupby pro…
meeseeksmachine Aug 30, 2022
46f7167
Backport PR #47762 on branch 1.5.x (REGR: preserve reindexed array ob…
meeseeksmachine Aug 30, 2022
c469b59
Backport PR #48246 on branch 1.5.x (REGR: iloc not possible for spars…
meeseeksmachine Aug 30, 2022
1196b8d
Backport PR #48314 on branch 1.5.x (DOC: v1.4.4 release date and tidy…
meeseeksmachine Aug 30, 2022
9115f68
Backport PR #48301 on branch 1.5.x (DEPR: Deprecate positional argume…
meeseeksmachine Aug 31, 2022
c65dc3c
Backport PR #48214 on branch 1.5.x (WEB: Removing links to pdf versio…
meeseeksmachine Aug 31, 2022
401c32b
Backport PR #48159 on branch 1.5.x (TST: Fix interchange/plotting/gro…
meeseeksmachine Aug 31, 2022
31de945
Backport PR #48324 on branch 1.5.x (BUG: Add note in whatsnew for Dat…
meeseeksmachine Sep 1, 2022
5987b63
Backport PR #48336 on branch 1.5.x (DOC: Add whatsnew note for #45404…
meeseeksmachine Sep 1, 2022
f0b0630
Backport PR #48254 on branch 1.5.x (REF: avoid FutureWarning about us…
meeseeksmachine Sep 2, 2022
e77e7c1
Backport PR #48334 on branch 1.5.x (BUG: read_html(extract_links=all)…
meeseeksmachine Sep 2, 2022
304cca1
Backport PR #48265 on branch 1.5.x (CI: Setting up ssh key to upload …
meeseeksmachine Sep 2, 2022
74ee2d2
Backport PR #48381 on branch 1.5.x (CI: Pin mambaforge image) (#48401)
meeseeksmachine Sep 5, 2022
bccc060
Backport PR #48229 on branch 1.5.x (TST: Test Nullable int floordiv b…
meeseeksmachine Sep 6, 2022
e6f5022
Backport PR #48414 on branch 1.5.x (DOC: Add deprecation to is_catego…
meeseeksmachine Sep 6, 2022
b98bdb7
Backport PR #48264 on branch 1.5.x (BUG: ArrowExtensionArray._from_* …
meeseeksmachine Sep 7, 2022
5616243
Backport PR #48411 on branch 1.5.x (REGR: get_loc for ExtensionEngine…
meeseeksmachine Sep 7, 2022
c5a598a
Backport PR #48419 on branch 1.5.x (BUG: ensure to return writable bu…
meeseeksmachine Sep 7, 2022
3fd62c4
Backport PR #48444 on branch 1.5.x (CI: Pin ipython version) (#48449)
meeseeksmachine Sep 8, 2022
4226f42
Backport PR #48380 on branch 1.5.x (DOC: Clarify that objects dtype t…
meeseeksmachine Sep 8, 2022
045e9e4
Manual Backport PR #48427 on branch 1.5.x (BLD: Refactor Dockerfile t…
mroeschke Sep 8, 2022
0f8bece
Backport PR #48426 on branch 1.5.x (BUG: Column.size should be a meth…
meeseeksmachine Sep 8, 2022
ba3494c
Backport PR #48398 on branch 1.5.x (WARN: Avoid FutureWarnings in tes…
meeseeksmachine Sep 8, 2022
5eedd75
Backport PR #48416 on branch 1.5.x (REF: ensure to apply suffixes bef…
meeseeksmachine Sep 8, 2022
54c1aa2
Backport PR #48354 on branch 1.5.x (CI: Bump timeout to 180 minutes) …
meeseeksmachine Sep 9, 2022
fca63e9
Backport PR #48472 on branch 1.5.x (PERF: keep using ObjectEngine for…
meeseeksmachine Sep 9, 2022
ad087f5
Backport PR #48473 on branch 1.5.x (REGR: .describe on unsigned dtype…
meeseeksmachine Sep 11, 2022
e6a014f
Backport PR #48443 on branch 1.5.x (BUG: Fix pyarrow groupby tests) …
phofl Sep 12, 2022
2a51062
Backport PR #48490 on branch 1.5.x (CI: Use -j1 for python-dev build …
meeseeksmachine Sep 12, 2022
b6e5132
Manual Backport PR #48428 on branch 1.5.x (BUG/TST: fix a bunch of ar…
mroeschke Sep 13, 2022
5817209
Backport PR #48525 on branch 1.5.x (CI: Fix py311 builds different ex…
meeseeksmachine Sep 13, 2022
ecc8ab4
Backport PR #48489 on branch 1.5.x (BUG: fix test_arrow.py tests) (#4…
meeseeksmachine Sep 13, 2022
e020bb6
Backport PR #48543 on branch 1.5.x (DOC: Update footer and include OV…
meeseeksmachine Sep 14, 2022
e5ab0ab
Manual Backport PR #48417 on branch 1.5.x (Revert set_index inplace a…
mroeschke Sep 15, 2022
f51c2a0
Backport PR #48550 on branch 1.5.x (TST: remove 2D tests irrelevant f…
meeseeksmachine Sep 15, 2022
b160966
Backport PR #48556 on branch 1.5.x (DOC: Fix docs footer) (#48558)
meeseeksmachine Sep 15, 2022
307ce80
Backport PR #48562 on branch 1.5.x (TST: Testing that no warnings are…
meeseeksmachine Sep 15, 2022
6ee47f9
Backport PR #48563 on branch 1.5.x (DOC: Fix read_sas 1.5 release not…
meeseeksmachine Sep 15, 2022
19a3f5a
Backport PR #48539 on branch 1.5.x (REGR: groupby doesn't identify nu…
meeseeksmachine Sep 15, 2022
1fb8811
Backport PR #48555 on branch 1.5.x (DEPR: Series.astype(np.datetime64…
meeseeksmachine Sep 15, 2022
9e8d859
Backport PR #48557 on branch 1.5.x (WEB: Add new footer to web) (#48571)
meeseeksmachine Sep 15, 2022
27fd6c6
Backport PR #48285 on branch 1.5.x (WEB: Unpin pydata sphinx theme) (…
meeseeksmachine Sep 16, 2022
3f91207
Backport PR #48572 on branch 1.5.x (DOC: Fixing styles for the dark t…
meeseeksmachine Sep 16, 2022
dfc00bf
Backport PR #48397 on branch 1.5.x (WARN: Remove false positive warni…
meeseeksmachine Sep 16, 2022
aabf659
Backport PR #48587 on branch 1.5.x (Fix `series.str.startswith(tuple)…
meeseeksmachine Sep 17, 2022
4fbb055
Backport PR #48601 on branch 1.5.x (CI: Fix matplolib release issues)…
meeseeksmachine Sep 18, 2022
f83e2fe
Backport PR #48623 on branch 1.5.x (REGR/DOC: Docs left navbar broke)…
meeseeksmachine Sep 18, 2022
e726483
Backport PR #48619 on branch 1.5.x (REGR: Loc.setitem with enlargemen…
meeseeksmachine Sep 19, 2022
ecc700c
Backport PR #48627 on branch 1.5.x (DOC: Last changes to release note…
meeseeksmachine Sep 19, 2022
87cfe4e
RLS: 1.5.0
Sep 19, 2022
7dae3a4
Backport PR #48642 on branch 1.5.x (DOC: Add release notes for 1.5.1)…
meeseeksmachine Sep 20, 2022
690f641
Backport PR #48639 on branch 1.5.x (CI: Fix directory name for publis…
meeseeksmachine Sep 20, 2022
e707814
Backport PR #48651 on branch 1.5.x (REGR: TextIOWrapper raising an er…
meeseeksmachine Sep 21, 2022
05ce6dc
Backport PR #48599 on branch 1.5.x (DOC: Add deprecation infos to dep…
meeseeksmachine Sep 21, 2022
8b6b5b4
Backport PR #48620 on branch 1.5.x (REGR: Performance decrease in fac…
meeseeksmachine Sep 22, 2022
7cbc9f4
Backport PR #48711 on branch 1.5.x (REGR: Regression in DataFrame.loc…
meeseeksmachine Sep 23, 2022
a10837b
Backport PR #48696 on branch 1.5.x (REGR: to_hdf raising AssertionErr…
meeseeksmachine Sep 23, 2022
98b8aa0
Backport PR #48734 on branch 1.5.x (REGR: Raise on invalid colormap f…
meeseeksmachine Sep 23, 2022
eb29839
Backport PR #48713 on branch 1.5.x (BUG: pivot_table raising Future W…
meeseeksmachine Sep 23, 2022
4449a8a
Backport PR #48703 on branch 1.5.x (Added theme_switcher ) (#48741)
meeseeksmachine Sep 23, 2022
b28b5c4
Backport PR #48697 on branch 1.5.x (REGR: None converted to NaN when …
meeseeksmachine Sep 23, 2022
486fe15
Backport PR #48702 on branch 1.5.x (REGR: dropna affects observed in …
meeseeksmachine Sep 23, 2022
2dfbe0c
Backport PR #48782 on branch 1.5.x (REGR: describe raising when resul…
meeseeksmachine Sep 26, 2022
b0bfbee
Backport PR #48662 on branch 1.5.x (BUG: Series.getitem not falling b…
meeseeksmachine Sep 27, 2022
ff7280b
Backport PR #48751 on branch 1.5.x (WEB: Update link to datapythonist…
meeseeksmachine Sep 27, 2022
ae20b63
Backport PR #48608 on branch 1.5.x (REGR: assert_index_equal raising …
meeseeksmachine Sep 27, 2022
9e95b20
Backport PR #48785 on branch 1.5.x (BUG: still emitting unnecessary F…
meeseeksmachine Sep 27, 2022
ecf056b
Backport PR #48693 on branch 1.5.x (ENH: Make deprecate_nonkeyword_ar…
meeseeksmachine Sep 27, 2022
a46ae6e
Backport PR #48579 on branch 1.5.x (BUG: Fix calling groupBy(...).app…
rhshadrach Sep 27, 2022
2e3a40a
Backport PR #48760 on branch 1.5.x (REGR: groupby.size with axis=1 do…
rhshadrach Sep 28, 2022
7078607
Backport PR #48820 on branch 1.5.x (BUG: to_datetime(format='...%f') …
phofl Sep 29, 2022
2d9e080
Backport PR #48850 on branch 1.5.x (TYP: Fix typing errors caused by …
phofl Sep 29, 2022
dfe0e55
Backport PR #48790 on branch 1.5.x (Created icons for dark theme) (#4…
meeseeksmachine Sep 30, 2022
e656091
Backport PR #48805 on branch 1.5.x (Added padding and fixed columns f…
meeseeksmachine Sep 30, 2022
96be757
Backport PR #48866 on branch 1.5.x (REGR: replace replacing wrong val…
meeseeksmachine Sep 30, 2022
98948fc
Backport PR #48853 on branch 1.5.x (REGR: Avoid unnecessary warning w…
meeseeksmachine Sep 30, 2022
c91e603
Backport PR #48833 on branch 1.5.x (BUG: ArrowExtensionArray compared…
meeseeksmachine Sep 30, 2022
c7e36af
Backport PR #48686 on branch 1.5.x (BUG: to_datetime(tz_mix, utc=True…
meeseeksmachine Sep 30, 2022
a1b3880
Backport PR #48736 on branch 1.5.x ( BUG: AttributeError: 'function' …
phofl Sep 30, 2022
278c182
Backport PR #48797 on branch 1.5.x (REGR: fix df.apply with keyword n…
phofl Sep 30, 2022
fdbc9ed
add pandas[foo] throughout to explain the optional extras process
JMBurley Oct 3, 2022
952bd50
extend optional_extra`all` to cover tests and redundant packages
JMBurley Oct 3, 2022
1aa9353
add tzdata from pandas 1.5.0
JMBurley Oct 4, 2022
5500240
Merge remote-tracking branch 'upstream/1.5.x' into add-recommended-de…
JMBurley Oct 4, 2022
dc64923
move summary to latest whatsnew doc
JMBurley Oct 4, 2022
f0c47b2
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 4, 2022
9b1f836
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 4, 2022
a833978
explicitly pair packages to optional_extra in installs
JMBurley Oct 4, 2022
19545a2
fix sphinx errors in install.rst
JMBurley Oct 4, 2022
7abd969
add: pytest-asyncio>=0.19.0
JMBurley Oct 4, 2022
de0a0f4
fsspec note
JMBurley Oct 4, 2022
e01d2b6
repin pytest-asyncio>=0.17.0
JMBurley Oct 4, 2022
fe6f8b0
move summary from whatsnew/v1.5.1 to v1.6.0
JMBurley Oct 4, 2022
90a49cc
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 4, 2022
e0bd407
linting
JMBurley Oct 5, 2022
95f34f6
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 5, 2022
6ee2645
Add `clipboard` as optional extra
JMBurley Oct 5, 2022
b34b976
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 5, 2022
381e31f
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 7, 2022
634f232
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 10, 2022
2037546
Review comments
JMBurley Oct 10, 2022
daca2ba
remove unneeded comment
JMBurley Oct 10, 2022
803ebde
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 10, 2022
dde3704
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 11, 2022
11a9c37
fix: leave 1.5.1.rst unchanged by this PR
JMBurley Oct 11, 2022
5811949
Update doc/source/whatsnew/v1.5.1.rst
JMBurley Oct 12, 2022
d42b8d4
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 14, 2022
0104da7
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 17, 2022
4e2646b
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 18, 2022
675a64f
pyarrow bump 1.0.1 -> 6.0.0
JMBurley Oct 18, 2022
7f6b477
Merge branch 'main' into add-recommended-dependencies-as-extras_requi…
JMBurley Oct 20, 2022
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