Backport PR #48734 on branch 1.5.x (REGR: Raise on invalid colormap for scatter plot) #48744
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* add-recommended-dependencies-as-extras_require-in-setup.cfg See issue #47335. #47335 recommended dependencies should have package mgmt facilitated through pandas. This will make mgmt of pandas in production docker environments a lot simpler. * Update v1.4.3.rst * double backtick code in rst * rebundle under extras_require `recommended` * [options.extras_require] bundled dependencies by featureset see #39164 for discussion. * note: [options.extras_require] bundled dependencies by featureset * Update setup.cfg rollback numba from recommended. This would necessitate and update to documentation that requires broad agreement from pd-dev-core team that would slow down the overall PR * add adlfs for azure to `access data in cloud` see #39164 for discussion. 0.6.0 might be an overly restrictive version, but it is compatible * fix extras_require: PyTables is actually `tables` on PyPi * Update setup.cfg * add `all` option to [options.extras_require] * moved changelog to 1.4.4 as 1.4.3 released while this PR was stalled * Updated to 1.5.0 compliance * simplify sql option names * extras rename: recommended -> performance * remove azure support is currently unofficial as of 1.5.0 * align with actions-38-minimum_versions.yaml add specific installs and, where required, missing install documentation for - odfpy - pyreadstat - compression options * Pandas -> pandas in doc Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * extras rename: s3 -> aws see #47336 (comment) * extras rename: table -> output_formatting to be more general in case of future changes * bug: `>=` not `=` * Apply suggestions from code review Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * align 1.5.0.rst to latest extras_require updates * 1.5.0.rst example updated to use valid extras * add optional dep mgmt instructions to install.rst * lint scipy optional import Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * Apply suggestions from code review * detailed extras guidance in install.rst - updated numbas to a full recommended dependency with a promotional bullet point like bottleneck and numexpr - clarified the extra to use for each set of optional dependencies - made xml an optional extra, because is does have usage outside of read_html. * _optional.py note to keep track of setup.cfg * bug: indent after bullet in install.rst * remove numba from computation extra. * Backport PR #48197 on branch 1.5.x (DOC: Cleanup 1.5 whatsnew) (#48228) Backport PR #48197: DOC: Cleanup 1.5 whatsnew Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48232 on branch 1.5.x (CI: Ensure jobs run on 1.5.x branch) (#48235) Backport PR #48232: CI: Ensure jobs run on 1.5.x branch Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48180 on branch 1.5.x (CI: Switch to large for circleci) (#48251) Backport PR #48180: CI: Switch to large for circleci Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48245 on branch 1.5.x (CI: Skip test_round_sanity tests due to failures) (#48257) Backport PR #48245: CI: Skip test_round_sanity tests due to failures Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48240 on branch 1.5.x (Fix mypy erroring on backport branches) (#48259) Backport PR #48240: Fix mypy erroring on backport branches Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48215 on branch 1.5.x (REGR: properly update DataFrame cache in Series.__setitem__) (#48268) Backport PR #48215: REGR: properly update DataFrame cache in Series.__setitem__ Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48272 on branch 1.5.x (CI: Require s3fs greater than minumum version in builds) (#48276) Backport PR #48272: CI: Require s3fs greater than minumum version in builds Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48299 on branch 1.5.x (Bump s3fs to 2021.08.00) (#48305) Backport PR #48299: Bump s3fs to 2021.08.00 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48027 on branch 1.5.x (ENH: Support masks in groupby prod) (#48302) Backport PR #48027: ENH: Support masks in groupby prod Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #47762 on branch 1.5.x (REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array) (#48309) Backport PR #47762: REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48246 on branch 1.5.x (REGR: iloc not possible for sparse DataFrame) (#48311) Backport PR #48246: REGR: iloc not possible for sparse DataFrame Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR #48314 on branch 1.5.x (DOC: v1.4.4 release date and tidy up release notes) (#48320) Backport PR #48314: DOC: v1.4.4 release date and tidy up release notes Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR #48301 on branch 1.5.x (DEPR: Deprecate positional arguments in pivot) (#48326) Backport PR #48301: DEPR: Deprecate positional arguments in pivot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48214 on branch 1.5.x (WEB: Removing links to pdf version of the docs from web and docs) (#48242) Backport PR #48214: WEB: Removing links to pdf version of the docs from web and docs * Backport PR #48159 on branch 1.5.x (TST: Fix interchange/plotting/groupby test warnings) (#48279) Backport PR #48159: TST: Fix interchange/plotting/groupby test warnings Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48324 on branch 1.5.x (BUG: Add note in whatsnew for DataFrame.at behavior change) (#48345) Backport PR #48324: BUG: Add note in whatsnew for DataFrame.at behavior change Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48336 on branch 1.5.x (DOC: Add whatsnew note for #45404) (#48341) Backport PR #48336: DOC: Add whatsnew note for #45404 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48254 on branch 1.5.x (REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage) (#48353) Backport PR #48254: REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48334 on branch 1.5.x (BUG: read_html(extract_links=all) with no header) (#48350) Backport PR #48334: BUG: read_html(extract_links=all) with no header Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48265 on branch 1.5.x (CI: Setting up ssh key to upload prod docs) (#48370) Backport PR #48265: CI: Setting up ssh key to upload prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48381 on branch 1.5.x (CI: Pin mambaforge image) (#48401) Backport PR #48381: CI: Pin mambaforge image Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48229 on branch 1.5.x (TST: Test Nullable int floordiv by 0) (#48413) Backport PR #48229: TST: Test Nullable int floordiv by 0 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48414 on branch 1.5.x (DOC: Add deprecation to is_categorical) (#48418) Backport PR #48414: DOC: Add deprecation to is_categorical Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> * Backport PR #48264 on branch 1.5.x (BUG: ArrowExtensionArray._from_* accepts pyarrow arrays) (#48422) * Backport PR #48264: BUG: ArrowExtensionArray._from_* accepts pyarrow arrays * Add missing import Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48411 on branch 1.5.x (REGR: get_loc for ExtensionEngine not returning bool indexer for na) (#48430) Backport PR #48411: REGR: get_loc for ExtensionEngine not returning bool indexer for na Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48419 on branch 1.5.x (BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column) (#48441) Backport PR #48419: BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48444 on branch 1.5.x (CI: Pin ipython version) (#48449) Backport PR #48444: CI: Pin ipython version Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48380 on branch 1.5.x (DOC: Clarify that objects dtype takes precedence in where) (#48445) * Backport PR #48380: DOC: Clarify that objects dtype takes precedence in where * Update generic.py Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Manual Backport PR #48427 on branch 1.5.x (BLD: Refactor Dockerfile to not install dev enviornment on base) (#48450) Backport PR #48427: BLD: Refactor Dockerfile to not install dev enviornment on base * Backport PR #48426 on branch 1.5.x (BUG: Column.size should be a method) (#48465) Backport PR #48426: BUG: Column.size should be a method Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48398 on branch 1.5.x (WARN: Avoid FutureWarnings in tests) (#48420) * Backport PR #48398: WARN: Avoid FutureWarnings in tests * Update Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48416 on branch 1.5.x (REF: ensure to apply suffixes before concat step in merge code) (#48470) Backport PR #48416: REF: ensure to apply suffixes before concat step in merge code Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48354 on branch 1.5.x (CI: Bump timeout to 180 minutes) (#48474) Backport PR #48354: CI: Bump timeout to 180 minutes Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48472 on branch 1.5.x (PERF: keep using ObjectEngine for ExtensionArrays for 1.5) (#48486) Backport PR #48472: PERF: keep using ObjectEngine for ExtensionArrays for 1.5 Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48473 on branch 1.5.x (REGR: .describe on unsigned dtypes results in object) (#48501) Backport PR #48473: REGR: .describe on unsigned dtypes results in object Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48443 on branch 1.5.x (BUG: Fix pyarrow groupby tests) (#48494) * BUG: Fix pyarrow groupby tests (#48443) # Conflicts: # pandas/tests/extension/test_arrow.py * CI: Fix failing tests (#48493) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48490 on branch 1.5.x (CI: Use -j1 for python-dev build to avoid flaky build error) (#48517) Backport PR #48490: CI: Use -j1 for python-dev build to avoid flaky build error Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Manual Backport PR #48428 on branch 1.5.x (BUG/TST: fix a bunch of arraymanager+pyarrow tests) (#48518) Backport PR #48428: BUG/TST: fix a bunch of arraymanager+pyarrow tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48525 on branch 1.5.x (CI: Fix py311 builds different exception message) (#48529) Backport PR #48525: CI: Fix py311 builds different exception message Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48489 on branch 1.5.x (BUG: fix test_arrow.py tests) (#48532) Backport PR #48489: BUG: fix test_arrow.py tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48543 on branch 1.5.x (DOC: Update footer and include OVH) (#48548) Backport PR #48543: DOC: Update footer and include OVH Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Manual Backport PR #48417 on branch 1.5.x (Revert set_index inplace and copy keyword changes) (#48552) Backport PR #48417: Revert set_index inplace and copy keyword changes Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR #48550 on branch 1.5.x (TST: remove 2D tests irrelevant for pyarrow) (#48554) Backport PR #48550: TST: remove 2D tests irrelevant for pyarrow Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48556 on branch 1.5.x (DOC: Fix docs footer) (#48558) Backport PR #48556: DOC: Fix docs footer Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48562 on branch 1.5.x (TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480)) (#48564) Backport PR #48562: TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480) Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> * Backport PR #48563 on branch 1.5.x (DOC: Fix read_sas 1.5 release notes) (#48565) Backport PR #48563: DOC: Fix read_sas 1.5 release notes Co-authored-by: Jonas Haag <jonas@lophus.org> * Backport PR #48539 on branch 1.5.x (REGR: groupby doesn't identify null values when sort=False) (#48568) Backport PR #48539: REGR: groupby doesn't identify null values when sort=False Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48555 on branch 1.5.x (DEPR: Series.astype(np.datetime64)) (#48569) Backport PR #48555: DEPR: Series.astype(np.datetime64) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR #48557 on branch 1.5.x (WEB: Add new footer to web) (#48571) Backport PR #48557: WEB: Add new footer to web Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48285 on branch 1.5.x (WEB: Unpin pydata sphinx theme) (#48585) Backport PR #48285: WEB: Unpin pydata sphinx theme Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48572 on branch 1.5.x (DOC: Fixing styles for the dark theme) (#48584) Backport PR #48572: DOC: Fixing styles for the dark theme Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48397 on branch 1.5.x (WARN: Remove false positive warning for iloc inplaceness) (#48583) Backport PR #48397: WARN: Remove false positive warning for iloc inplaceness Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48587 on branch 1.5.x (Fix `series.str.startswith(tuple)`) (#48593) Backport PR #48587: Fix `series.str.startswith(tuple)` Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> * Backport PR #48601 on branch 1.5.x (CI: Fix matplolib release issues) (#48617) Backport PR #48601: CI: Fix matplolib release issues Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48623 on branch 1.5.x (REGR/DOC: Docs left navbar broke) (#48625) Backport PR #48623: REGR/DOC: Docs left navbar broke Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48619 on branch 1.5.x (REGR: Loc.setitem with enlargement raises for nested data) (#48629) Backport PR #48619: REGR: Loc.setitem with enlargement raises for nested data Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48627 on branch 1.5.x (DOC: Last changes to release notes for 1.5.0 release) (#48630) Backport PR #48627: DOC: Last changes to release notes for 1.5.0 release Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * RLS: 1.5.0 * Backport PR #48642 on branch 1.5.x (DOC: Add release notes for 1.5.1) (#48647) Backport PR #48642: DOC: Add release notes for 1.5.1 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48639 on branch 1.5.x (CI: Fix directory name for published prod docs) (#48648) Backport PR #48639: CI: Fix directory name for published prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48651 on branch 1.5.x (REGR: TextIOWrapper raising an error in read_csv) (#48666) Backport PR #48651: REGR: TextIOWrapper raising an error in read_csv Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> * Backport PR #48599 on branch 1.5.x (DOC: Add deprecation infos to deprecated functions) (#48690) Backport PR #48599: DOC: Add deprecation infos to deprecated functions Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48620 on branch 1.5.x (REGR: Performance decrease in factorize) (#48710) Backport PR #48620: REGR: Performance decrease in factorize Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48711 on branch 1.5.x (REGR: Regression in DataFrame.loc when setting df with all True indexer) (#48717) Backport PR #48711: REGR: Regression in DataFrame.loc when setting df with all True indexer Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48696 on branch 1.5.x (REGR: to_hdf raising AssertionError with boolean index) (#48716) Backport PR #48696: REGR: to_hdf raising AssertionError with boolean index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48734 on branch 1.5.x (REGR: Raise on invalid colormap for scatter plot) (#48744) Backport PR #48734: REGR: Raise on invalid colormap for scatter plot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48713 on branch 1.5.x (BUG: pivot_table raising Future Warning with datetime column as index) (#48742) Backport PR #48713: BUG: pivot_table raising Future Warning with datetime column as index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48703 on branch 1.5.x (Added theme_switcher ) (#48741) Backport PR #48703: Added theme_switcher Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> * Backport PR #48697 on branch 1.5.x (REGR: None converted to NaN when enlarging Series) (#48745) Backport PR #48697: REGR: None converted to NaN when enlarging Series Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48702 on branch 1.5.x (REGR: dropna affects observed in groupby) (#48750) Backport PR #48702: REGR: dropna affects observed in groupby Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR #48782 on branch 1.5.x (REGR: describe raising when result contains NA) (#48793) Backport PR #48782: REGR: describe raising when result contains NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48662 on branch 1.5.x (BUG: Series.getitem not falling back to positional for bool index) (#48799) Backport PR #48662: BUG: Series.getitem not falling back to positional for bool index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48751 on branch 1.5.x (WEB: Update link to datapythonista blog url) (#48798) Backport PR #48751: WEB: Update link to datapythonista blog url Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR #48608 on branch 1.5.x (REGR: assert_index_equal raising with non matching pd.NA) (#48800) * Backport PR #48608: REGR: assert_index_equal raising with non matching pd.NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48785 on branch 1.5.x (BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns) (#48807) Backport PR #48785: BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> * Backport PR #48693 on branch 1.5.x (ENH: Make deprecate_nonkeyword_arguments alter function signature) (#48795) Backport PR #48693: ENH: Make deprecate_nonkeyword_arguments alter function signature Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * Backport PR #48579 on branch 1.5.x (BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func) (#48817) BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func (#48579) (cherry picked from commit 8b0ad71) Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> * Backport PR #48760 on branch 1.5.x (REGR: groupby.size with axis=1 doesn't return a Series) (#48825) * Backport PR #48820 on branch 1.5.x (BUG: to_datetime(format='...%f') parses nanoseconds) (#48860) BUG: to_datetime(format='...%f') parses nanoseconds (#48820) Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48850 on branch 1.5.x (TYP: Fix typing errors caused by new numpy) (#48859) * Backport PR #48790 on branch 1.5.x (Created icons for dark theme) (#48875) Backport PR #48790: Created icons for dark theme Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> * Backport PR #48805 on branch 1.5.x (Added padding and fixed columns for sponsor logos in mobile view) (#48874) Backport PR #48805: Added padding and fixed columns for sponsor logos in mobile view Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com> * Backport PR #48866 on branch 1.5.x (REGR: replace replacing wrong values with inplace and datetime) (#48872) Backport PR #48866: REGR: replace replacing wrong values with inplace and datetime Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48853 on branch 1.5.x (REGR: Avoid unnecessary warning when setting empty dataframe) (#48873) Backport PR #48853: REGR: Avoid unnecessary warning when setting empty dataframe Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR #48833 on branch 1.5.x (BUG: ArrowExtensionArray compared to invalid object not raising) (#48878) Backport PR #48833: BUG: ArrowExtensionArray compared to invalid object not raising Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48686 on branch 1.5.x (BUG: to_datetime(tz_mix, utc=True) converts to UTC) (#48882) Backport PR #48686: BUG: to_datetime(tz_mix, utc=True) converts to UTC Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR #48736 on branch 1.5.x ( BUG: AttributeError: 'function' object has no attribute 'currentframe') (#48887) * Backport PR #48797 on branch 1.5.x (REGR: fix df.apply with keyword non-zero axis) (#48886) REGR: fix df.apply with keyword non-zero axis (#48797) Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * add pandas[foo] throughout to explain the optional extras process Also `Recommended dependencies` to `Performance dependencies (recommended)` * extend optional_extra`all` to cover tests and redundant packages * add tzdata from pandas 1.5.0 * move summary to latest whatsnew doc Code is now stable and updated. Attempt a port from doc/source/whatsnew/v1.5.0.rst over to latest document doc/source/whatsnew/v1.5.1.rst. * explicitly pair packages to optional_extra in installs * fix sphinx errors in install.rst extra padding on column + empty return before table * add: pytest-asyncio>=0.19.0 pytest-asyncio>=0.19.0 Closes #48361. No version guidance available so went for latest. No-one should be messing around with tests without modern installs. * fsspec note * repin pytest-asyncio>=0.17.0 matches pytest-asyncio>=0.17.0 in ci/deps/actions-38-minimum_versions.yaml * move summary from whatsnew/v1.5.1 to v1.6.0 plus add (:issue:`48361`) resolution note * linting double-backtick ``test`` underline tilde match title length * Add `clipboard` as optional extra * Review comments - fss optional extra - better numba description * remove unneeded comment * fix: leave 1.5.1.rst unchanged by this PR * Update doc/source/whatsnew/v1.5.1.rst Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * pyarrow bump 1.0.1 -> 6.0.0 Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> Co-authored-by: MeeseeksMachine <39504233+meeseeksmachine@users.noreply.github.com> Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> Co-authored-by: Jonas Haag <jonas@lophus.org> Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> Co-authored-by: Pandas Development Team <pandas-dev@python.org> Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com>
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…dev#47336) * add-recommended-dependencies-as-extras_require-in-setup.cfg See issue pandas-dev#47335. pandas-dev#47335 recommended dependencies should have package mgmt facilitated through pandas. This will make mgmt of pandas in production docker environments a lot simpler. * Update v1.4.3.rst * double backtick code in rst * rebundle under extras_require `recommended` * [options.extras_require] bundled dependencies by featureset see pandas-dev#39164 for discussion. * note: [options.extras_require] bundled dependencies by featureset * Update setup.cfg rollback numba from recommended. This would necessitate and update to documentation that requires broad agreement from pd-dev-core team that would slow down the overall PR * add adlfs for azure to `access data in cloud` see pandas-dev#39164 for discussion. 0.6.0 might be an overly restrictive version, but it is compatible * fix extras_require: PyTables is actually `tables` on PyPi * Update setup.cfg * add `all` option to [options.extras_require] * moved changelog to 1.4.4 as 1.4.3 released while this PR was stalled * Updated to 1.5.0 compliance * simplify sql option names * extras rename: recommended -> performance * remove azure support is currently unofficial as of 1.5.0 * align with actions-38-minimum_versions.yaml add specific installs and, where required, missing install documentation for - odfpy - pyreadstat - compression options * Pandas -> pandas in doc Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * extras rename: s3 -> aws see pandas-dev#47336 (comment) * extras rename: table -> output_formatting to be more general in case of future changes * bug: `>=` not `=` * Apply suggestions from code review Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * align 1.5.0.rst to latest extras_require updates * 1.5.0.rst example updated to use valid extras * add optional dep mgmt instructions to install.rst * lint scipy optional import Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * Apply suggestions from code review * detailed extras guidance in install.rst - updated numbas to a full recommended dependency with a promotional bullet point like bottleneck and numexpr - clarified the extra to use for each set of optional dependencies - made xml an optional extra, because is does have usage outside of read_html. * _optional.py note to keep track of setup.cfg * bug: indent after bullet in install.rst * remove numba from computation extra. * Backport PR pandas-dev#48197 on branch 1.5.x (DOC: Cleanup 1.5 whatsnew) (pandas-dev#48228) Backport PR pandas-dev#48197: DOC: Cleanup 1.5 whatsnew Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48232 on branch 1.5.x (CI: Ensure jobs run on 1.5.x branch) (pandas-dev#48235) Backport PR pandas-dev#48232: CI: Ensure jobs run on 1.5.x branch Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48180 on branch 1.5.x (CI: Switch to large for circleci) (pandas-dev#48251) Backport PR pandas-dev#48180: CI: Switch to large for circleci Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48245 on branch 1.5.x (CI: Skip test_round_sanity tests due to failures) (pandas-dev#48257) Backport PR pandas-dev#48245: CI: Skip test_round_sanity tests due to failures Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48240 on branch 1.5.x (Fix mypy erroring on backport branches) (pandas-dev#48259) Backport PR pandas-dev#48240: Fix mypy erroring on backport branches Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48215 on branch 1.5.x (REGR: properly update DataFrame cache in Series.__setitem__) (pandas-dev#48268) Backport PR pandas-dev#48215: REGR: properly update DataFrame cache in Series.__setitem__ Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48272 on branch 1.5.x (CI: Require s3fs greater than minumum version in builds) (pandas-dev#48276) Backport PR pandas-dev#48272: CI: Require s3fs greater than minumum version in builds Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48299 on branch 1.5.x (Bump s3fs to 2021.08.00) (pandas-dev#48305) Backport PR pandas-dev#48299: Bump s3fs to 2021.08.00 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48027 on branch 1.5.x (ENH: Support masks in groupby prod) (pandas-dev#48302) Backport PR pandas-dev#48027: ENH: Support masks in groupby prod Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#47762 on branch 1.5.x (REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array) (pandas-dev#48309) Backport PR pandas-dev#47762: REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48246 on branch 1.5.x (REGR: iloc not possible for sparse DataFrame) (pandas-dev#48311) Backport PR pandas-dev#48246: REGR: iloc not possible for sparse DataFrame Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR pandas-dev#48314 on branch 1.5.x (DOC: v1.4.4 release date and tidy up release notes) (pandas-dev#48320) Backport PR pandas-dev#48314: DOC: v1.4.4 release date and tidy up release notes Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR pandas-dev#48301 on branch 1.5.x (DEPR: Deprecate positional arguments in pivot) (pandas-dev#48326) Backport PR pandas-dev#48301: DEPR: Deprecate positional arguments in pivot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48214 on branch 1.5.x (WEB: Removing links to pdf version of the docs from web and docs) (pandas-dev#48242) Backport PR pandas-dev#48214: WEB: Removing links to pdf version of the docs from web and docs * Backport PR pandas-dev#48159 on branch 1.5.x (TST: Fix interchange/plotting/groupby test warnings) (pandas-dev#48279) Backport PR pandas-dev#48159: TST: Fix interchange/plotting/groupby test warnings Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48324 on branch 1.5.x (BUG: Add note in whatsnew for DataFrame.at behavior change) (pandas-dev#48345) Backport PR pandas-dev#48324: BUG: Add note in whatsnew for DataFrame.at behavior change Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48336 on branch 1.5.x (DOC: Add whatsnew note for pandas-dev#45404) (pandas-dev#48341) Backport PR pandas-dev#48336: DOC: Add whatsnew note for pandas-dev#45404 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48254 on branch 1.5.x (REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage) (pandas-dev#48353) Backport PR pandas-dev#48254: REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48334 on branch 1.5.x (BUG: read_html(extract_links=all) with no header) (pandas-dev#48350) Backport PR pandas-dev#48334: BUG: read_html(extract_links=all) with no header Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48265 on branch 1.5.x (CI: Setting up ssh key to upload prod docs) (pandas-dev#48370) Backport PR pandas-dev#48265: CI: Setting up ssh key to upload prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48381 on branch 1.5.x (CI: Pin mambaforge image) (pandas-dev#48401) Backport PR pandas-dev#48381: CI: Pin mambaforge image Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48229 on branch 1.5.x (TST: Test Nullable int floordiv by 0) (pandas-dev#48413) Backport PR pandas-dev#48229: TST: Test Nullable int floordiv by 0 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48414 on branch 1.5.x (DOC: Add deprecation to is_categorical) (pandas-dev#48418) Backport PR pandas-dev#48414: DOC: Add deprecation to is_categorical Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> * Backport PR pandas-dev#48264 on branch 1.5.x (BUG: ArrowExtensionArray._from_* accepts pyarrow arrays) (pandas-dev#48422) * Backport PR pandas-dev#48264: BUG: ArrowExtensionArray._from_* accepts pyarrow arrays * Add missing import Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48411 on branch 1.5.x (REGR: get_loc for ExtensionEngine not returning bool indexer for na) (pandas-dev#48430) Backport PR pandas-dev#48411: REGR: get_loc for ExtensionEngine not returning bool indexer for na Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48419 on branch 1.5.x (BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column) (pandas-dev#48441) Backport PR pandas-dev#48419: BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48444 on branch 1.5.x (CI: Pin ipython version) (pandas-dev#48449) Backport PR pandas-dev#48444: CI: Pin ipython version Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48380 on branch 1.5.x (DOC: Clarify that objects dtype takes precedence in where) (pandas-dev#48445) * Backport PR pandas-dev#48380: DOC: Clarify that objects dtype takes precedence in where * Update generic.py Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Manual Backport PR pandas-dev#48427 on branch 1.5.x (BLD: Refactor Dockerfile to not install dev enviornment on base) (pandas-dev#48450) Backport PR pandas-dev#48427: BLD: Refactor Dockerfile to not install dev enviornment on base * Backport PR pandas-dev#48426 on branch 1.5.x (BUG: Column.size should be a method) (pandas-dev#48465) Backport PR pandas-dev#48426: BUG: Column.size should be a method Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48398 on branch 1.5.x (WARN: Avoid FutureWarnings in tests) (pandas-dev#48420) * Backport PR pandas-dev#48398: WARN: Avoid FutureWarnings in tests * Update Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48416 on branch 1.5.x (REF: ensure to apply suffixes before concat step in merge code) (pandas-dev#48470) Backport PR pandas-dev#48416: REF: ensure to apply suffixes before concat step in merge code Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48354 on branch 1.5.x (CI: Bump timeout to 180 minutes) (pandas-dev#48474) Backport PR pandas-dev#48354: CI: Bump timeout to 180 minutes Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48472 on branch 1.5.x (PERF: keep using ObjectEngine for ExtensionArrays for 1.5) (pandas-dev#48486) Backport PR pandas-dev#48472: PERF: keep using ObjectEngine for ExtensionArrays for 1.5 Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48473 on branch 1.5.x (REGR: .describe on unsigned dtypes results in object) (pandas-dev#48501) Backport PR pandas-dev#48473: REGR: .describe on unsigned dtypes results in object Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48443 on branch 1.5.x (BUG: Fix pyarrow groupby tests) (pandas-dev#48494) * BUG: Fix pyarrow groupby tests (pandas-dev#48443) # Conflicts: # pandas/tests/extension/test_arrow.py * CI: Fix failing tests (pandas-dev#48493) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48490 on branch 1.5.x (CI: Use -j1 for python-dev build to avoid flaky build error) (pandas-dev#48517) Backport PR pandas-dev#48490: CI: Use -j1 for python-dev build to avoid flaky build error Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Manual Backport PR pandas-dev#48428 on branch 1.5.x (BUG/TST: fix a bunch of arraymanager+pyarrow tests) (pandas-dev#48518) Backport PR pandas-dev#48428: BUG/TST: fix a bunch of arraymanager+pyarrow tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48525 on branch 1.5.x (CI: Fix py311 builds different exception message) (pandas-dev#48529) Backport PR pandas-dev#48525: CI: Fix py311 builds different exception message Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48489 on branch 1.5.x (BUG: fix test_arrow.py tests) (pandas-dev#48532) Backport PR pandas-dev#48489: BUG: fix test_arrow.py tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48543 on branch 1.5.x (DOC: Update footer and include OVH) (pandas-dev#48548) Backport PR pandas-dev#48543: DOC: Update footer and include OVH Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Manual Backport PR pandas-dev#48417 on branch 1.5.x (Revert set_index inplace and copy keyword changes) (pandas-dev#48552) Backport PR pandas-dev#48417: Revert set_index inplace and copy keyword changes Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48550 on branch 1.5.x (TST: remove 2D tests irrelevant for pyarrow) (pandas-dev#48554) Backport PR pandas-dev#48550: TST: remove 2D tests irrelevant for pyarrow Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48556 on branch 1.5.x (DOC: Fix docs footer) (pandas-dev#48558) Backport PR pandas-dev#48556: DOC: Fix docs footer Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48562 on branch 1.5.x (TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480)) (pandas-dev#48564) Backport PR pandas-dev#48562: TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480) Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> * Backport PR pandas-dev#48563 on branch 1.5.x (DOC: Fix read_sas 1.5 release notes) (pandas-dev#48565) Backport PR pandas-dev#48563: DOC: Fix read_sas 1.5 release notes Co-authored-by: Jonas Haag <jonas@lophus.org> * Backport PR pandas-dev#48539 on branch 1.5.x (REGR: groupby doesn't identify null values when sort=False) (pandas-dev#48568) Backport PR pandas-dev#48539: REGR: groupby doesn't identify null values when sort=False Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48555 on branch 1.5.x (DEPR: Series.astype(np.datetime64)) (pandas-dev#48569) Backport PR pandas-dev#48555: DEPR: Series.astype(np.datetime64) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48557 on branch 1.5.x (WEB: Add new footer to web) (pandas-dev#48571) Backport PR pandas-dev#48557: WEB: Add new footer to web Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48285 on branch 1.5.x (WEB: Unpin pydata sphinx theme) (pandas-dev#48585) Backport PR pandas-dev#48285: WEB: Unpin pydata sphinx theme Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48572 on branch 1.5.x (DOC: Fixing styles for the dark theme) (pandas-dev#48584) Backport PR pandas-dev#48572: DOC: Fixing styles for the dark theme Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48397 on branch 1.5.x (WARN: Remove false positive warning for iloc inplaceness) (pandas-dev#48583) Backport PR pandas-dev#48397: WARN: Remove false positive warning for iloc inplaceness Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48587 on branch 1.5.x (Fix `series.str.startswith(tuple)`) (pandas-dev#48593) Backport PR pandas-dev#48587: Fix `series.str.startswith(tuple)` Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> * Backport PR pandas-dev#48601 on branch 1.5.x (CI: Fix matplolib release issues) (pandas-dev#48617) Backport PR pandas-dev#48601: CI: Fix matplolib release issues Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48623 on branch 1.5.x (REGR/DOC: Docs left navbar broke) (pandas-dev#48625) Backport PR pandas-dev#48623: REGR/DOC: Docs left navbar broke Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48619 on branch 1.5.x (REGR: Loc.setitem with enlargement raises for nested data) (pandas-dev#48629) Backport PR pandas-dev#48619: REGR: Loc.setitem with enlargement raises for nested data Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48627 on branch 1.5.x (DOC: Last changes to release notes for 1.5.0 release) (pandas-dev#48630) Backport PR pandas-dev#48627: DOC: Last changes to release notes for 1.5.0 release Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * RLS: 1.5.0 * Backport PR pandas-dev#48642 on branch 1.5.x (DOC: Add release notes for 1.5.1) (pandas-dev#48647) Backport PR pandas-dev#48642: DOC: Add release notes for 1.5.1 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48639 on branch 1.5.x (CI: Fix directory name for published prod docs) (pandas-dev#48648) Backport PR pandas-dev#48639: CI: Fix directory name for published prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48651 on branch 1.5.x (REGR: TextIOWrapper raising an error in read_csv) (pandas-dev#48666) Backport PR pandas-dev#48651: REGR: TextIOWrapper raising an error in read_csv Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> * Backport PR pandas-dev#48599 on branch 1.5.x (DOC: Add deprecation infos to deprecated functions) (pandas-dev#48690) Backport PR pandas-dev#48599: DOC: Add deprecation infos to deprecated functions Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48620 on branch 1.5.x (REGR: Performance decrease in factorize) (pandas-dev#48710) Backport PR pandas-dev#48620: REGR: Performance decrease in factorize Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48711 on branch 1.5.x (REGR: Regression in DataFrame.loc when setting df with all True indexer) (pandas-dev#48717) Backport PR pandas-dev#48711: REGR: Regression in DataFrame.loc when setting df with all True indexer Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48696 on branch 1.5.x (REGR: to_hdf raising AssertionError with boolean index) (pandas-dev#48716) Backport PR pandas-dev#48696: REGR: to_hdf raising AssertionError with boolean index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48734 on branch 1.5.x (REGR: Raise on invalid colormap for scatter plot) (pandas-dev#48744) Backport PR pandas-dev#48734: REGR: Raise on invalid colormap for scatter plot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48713 on branch 1.5.x (BUG: pivot_table raising Future Warning with datetime column as index) (pandas-dev#48742) Backport PR pandas-dev#48713: BUG: pivot_table raising Future Warning with datetime column as index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48703 on branch 1.5.x (Added theme_switcher ) (pandas-dev#48741) Backport PR pandas-dev#48703: Added theme_switcher Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> * Backport PR pandas-dev#48697 on branch 1.5.x (REGR: None converted to NaN when enlarging Series) (pandas-dev#48745) Backport PR pandas-dev#48697: REGR: None converted to NaN when enlarging Series Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48702 on branch 1.5.x (REGR: dropna affects observed in groupby) (pandas-dev#48750) Backport PR pandas-dev#48702: REGR: dropna affects observed in groupby Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48782 on branch 1.5.x (REGR: describe raising when result contains NA) (pandas-dev#48793) Backport PR pandas-dev#48782: REGR: describe raising when result contains NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48662 on branch 1.5.x (BUG: Series.getitem not falling back to positional for bool index) (pandas-dev#48799) Backport PR pandas-dev#48662: BUG: Series.getitem not falling back to positional for bool index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48751 on branch 1.5.x (WEB: Update link to datapythonista blog url) (pandas-dev#48798) Backport PR pandas-dev#48751: WEB: Update link to datapythonista blog url Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48608 on branch 1.5.x (REGR: assert_index_equal raising with non matching pd.NA) (pandas-dev#48800) * Backport PR pandas-dev#48608: REGR: assert_index_equal raising with non matching pd.NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48785 on branch 1.5.x (BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns) (pandas-dev#48807) Backport PR pandas-dev#48785: BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> * Backport PR pandas-dev#48693 on branch 1.5.x (ENH: Make deprecate_nonkeyword_arguments alter function signature) (pandas-dev#48795) Backport PR pandas-dev#48693: ENH: Make deprecate_nonkeyword_arguments alter function signature Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * Backport PR pandas-dev#48579 on branch 1.5.x (BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func) (pandas-dev#48817) BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func (pandas-dev#48579) (cherry picked from commit 8b0ad71) Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> * Backport PR pandas-dev#48760 on branch 1.5.x (REGR: groupby.size with axis=1 doesn't return a Series) (pandas-dev#48825) * Backport PR pandas-dev#48820 on branch 1.5.x (BUG: to_datetime(format='...%f') parses nanoseconds) (pandas-dev#48860) BUG: to_datetime(format='...%f') parses nanoseconds (pandas-dev#48820) Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48850 on branch 1.5.x (TYP: Fix typing errors caused by new numpy) (pandas-dev#48859) * Backport PR pandas-dev#48790 on branch 1.5.x (Created icons for dark theme) (pandas-dev#48875) Backport PR pandas-dev#48790: Created icons for dark theme Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> * Backport PR pandas-dev#48805 on branch 1.5.x (Added padding and fixed columns for sponsor logos in mobile view) (pandas-dev#48874) Backport PR pandas-dev#48805: Added padding and fixed columns for sponsor logos in mobile view Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com> * Backport PR pandas-dev#48866 on branch 1.5.x (REGR: replace replacing wrong values with inplace and datetime) (pandas-dev#48872) Backport PR pandas-dev#48866: REGR: replace replacing wrong values with inplace and datetime Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48853 on branch 1.5.x (REGR: Avoid unnecessary warning when setting empty dataframe) (pandas-dev#48873) Backport PR pandas-dev#48853: REGR: Avoid unnecessary warning when setting empty dataframe Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48833 on branch 1.5.x (BUG: ArrowExtensionArray compared to invalid object not raising) (pandas-dev#48878) Backport PR pandas-dev#48833: BUG: ArrowExtensionArray compared to invalid object not raising Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48686 on branch 1.5.x (BUG: to_datetime(tz_mix, utc=True) converts to UTC) (pandas-dev#48882) Backport PR pandas-dev#48686: BUG: to_datetime(tz_mix, utc=True) converts to UTC Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48736 on branch 1.5.x ( BUG: AttributeError: 'function' object has no attribute 'currentframe') (pandas-dev#48887) * Backport PR pandas-dev#48797 on branch 1.5.x (REGR: fix df.apply with keyword non-zero axis) (pandas-dev#48886) REGR: fix df.apply with keyword non-zero axis (pandas-dev#48797) Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * add pandas[foo] throughout to explain the optional extras process Also `Recommended dependencies` to `Performance dependencies (recommended)` * extend optional_extra`all` to cover tests and redundant packages * add tzdata from pandas 1.5.0 * move summary to latest whatsnew doc Code is now stable and updated. Attempt a port from doc/source/whatsnew/v1.5.0.rst over to latest document doc/source/whatsnew/v1.5.1.rst. * explicitly pair packages to optional_extra in installs * fix sphinx errors in install.rst extra padding on column + empty return before table * add: pytest-asyncio>=0.19.0 pytest-asyncio>=0.19.0 Closes pandas-dev#48361. No version guidance available so went for latest. No-one should be messing around with tests without modern installs. * fsspec note * repin pytest-asyncio>=0.17.0 matches pytest-asyncio>=0.17.0 in ci/deps/actions-38-minimum_versions.yaml * move summary from whatsnew/v1.5.1 to v1.6.0 plus add (:issue:`48361`) resolution note * linting double-backtick ``test`` underline tilde match title length * Add `clipboard` as optional extra * Review comments - fss optional extra - better numba description * remove unneeded comment * fix: leave 1.5.1.rst unchanged by this PR * Update doc/source/whatsnew/v1.5.1.rst Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * pyarrow bump 1.0.1 -> 6.0.0 Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> Co-authored-by: MeeseeksMachine <39504233+meeseeksmachine@users.noreply.github.com> Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> Co-authored-by: Jonas Haag <jonas@lophus.org> Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> Co-authored-by: Pandas Development Team <pandas-dev@python.org> Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com>
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…dev#47336) * add-recommended-dependencies-as-extras_require-in-setup.cfg See issue pandas-dev#47335. pandas-dev#47335 recommended dependencies should have package mgmt facilitated through pandas. This will make mgmt of pandas in production docker environments a lot simpler. * Update v1.4.3.rst * double backtick code in rst * rebundle under extras_require `recommended` * [options.extras_require] bundled dependencies by featureset see pandas-dev#39164 for discussion. * note: [options.extras_require] bundled dependencies by featureset * Update setup.cfg rollback numba from recommended. This would necessitate and update to documentation that requires broad agreement from pd-dev-core team that would slow down the overall PR * add adlfs for azure to `access data in cloud` see pandas-dev#39164 for discussion. 0.6.0 might be an overly restrictive version, but it is compatible * fix extras_require: PyTables is actually `tables` on PyPi * Update setup.cfg * add `all` option to [options.extras_require] * moved changelog to 1.4.4 as 1.4.3 released while this PR was stalled * Updated to 1.5.0 compliance * simplify sql option names * extras rename: recommended -> performance * remove azure support is currently unofficial as of 1.5.0 * align with actions-38-minimum_versions.yaml add specific installs and, where required, missing install documentation for - odfpy - pyreadstat - compression options * Pandas -> pandas in doc Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * extras rename: s3 -> aws see pandas-dev#47336 (comment) * extras rename: table -> output_formatting to be more general in case of future changes * bug: `>=` not `=` * Apply suggestions from code review Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * align 1.5.0.rst to latest extras_require updates * 1.5.0.rst example updated to use valid extras * add optional dep mgmt instructions to install.rst * lint scipy optional import Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> * Apply suggestions from code review * detailed extras guidance in install.rst - updated numbas to a full recommended dependency with a promotional bullet point like bottleneck and numexpr - clarified the extra to use for each set of optional dependencies - made xml an optional extra, because is does have usage outside of read_html. * _optional.py note to keep track of setup.cfg * bug: indent after bullet in install.rst * remove numba from computation extra. * Backport PR pandas-dev#48197 on branch 1.5.x (DOC: Cleanup 1.5 whatsnew) (pandas-dev#48228) Backport PR pandas-dev#48197: DOC: Cleanup 1.5 whatsnew Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48232 on branch 1.5.x (CI: Ensure jobs run on 1.5.x branch) (pandas-dev#48235) Backport PR pandas-dev#48232: CI: Ensure jobs run on 1.5.x branch Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48180 on branch 1.5.x (CI: Switch to large for circleci) (pandas-dev#48251) Backport PR pandas-dev#48180: CI: Switch to large for circleci Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48245 on branch 1.5.x (CI: Skip test_round_sanity tests due to failures) (pandas-dev#48257) Backport PR pandas-dev#48245: CI: Skip test_round_sanity tests due to failures Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48240 on branch 1.5.x (Fix mypy erroring on backport branches) (pandas-dev#48259) Backport PR pandas-dev#48240: Fix mypy erroring on backport branches Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48215 on branch 1.5.x (REGR: properly update DataFrame cache in Series.__setitem__) (pandas-dev#48268) Backport PR pandas-dev#48215: REGR: properly update DataFrame cache in Series.__setitem__ Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48272 on branch 1.5.x (CI: Require s3fs greater than minumum version in builds) (pandas-dev#48276) Backport PR pandas-dev#48272: CI: Require s3fs greater than minumum version in builds Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48299 on branch 1.5.x (Bump s3fs to 2021.08.00) (pandas-dev#48305) Backport PR pandas-dev#48299: Bump s3fs to 2021.08.00 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48027 on branch 1.5.x (ENH: Support masks in groupby prod) (pandas-dev#48302) Backport PR pandas-dev#48027: ENH: Support masks in groupby prod Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#47762 on branch 1.5.x (REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array) (pandas-dev#48309) Backport PR pandas-dev#47762: REGR: preserve reindexed array object (instead of creating new array) for concat with all-NA array Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48246 on branch 1.5.x (REGR: iloc not possible for sparse DataFrame) (pandas-dev#48311) Backport PR pandas-dev#48246: REGR: iloc not possible for sparse DataFrame Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR pandas-dev#48314 on branch 1.5.x (DOC: v1.4.4 release date and tidy up release notes) (pandas-dev#48320) Backport PR pandas-dev#48314: DOC: v1.4.4 release date and tidy up release notes Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> * Backport PR pandas-dev#48301 on branch 1.5.x (DEPR: Deprecate positional arguments in pivot) (pandas-dev#48326) Backport PR pandas-dev#48301: DEPR: Deprecate positional arguments in pivot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48214 on branch 1.5.x (WEB: Removing links to pdf version of the docs from web and docs) (pandas-dev#48242) Backport PR pandas-dev#48214: WEB: Removing links to pdf version of the docs from web and docs * Backport PR pandas-dev#48159 on branch 1.5.x (TST: Fix interchange/plotting/groupby test warnings) (pandas-dev#48279) Backport PR pandas-dev#48159: TST: Fix interchange/plotting/groupby test warnings Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48324 on branch 1.5.x (BUG: Add note in whatsnew for DataFrame.at behavior change) (pandas-dev#48345) Backport PR pandas-dev#48324: BUG: Add note in whatsnew for DataFrame.at behavior change Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48336 on branch 1.5.x (DOC: Add whatsnew note for pandas-dev#45404) (pandas-dev#48341) Backport PR pandas-dev#48336: DOC: Add whatsnew note for pandas-dev#45404 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48254 on branch 1.5.x (REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage) (pandas-dev#48353) Backport PR pandas-dev#48254: REF: avoid FutureWarning about using deprecates loc.__setitem__ non-inplace usage Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48334 on branch 1.5.x (BUG: read_html(extract_links=all) with no header) (pandas-dev#48350) Backport PR pandas-dev#48334: BUG: read_html(extract_links=all) with no header Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48265 on branch 1.5.x (CI: Setting up ssh key to upload prod docs) (pandas-dev#48370) Backport PR pandas-dev#48265: CI: Setting up ssh key to upload prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48381 on branch 1.5.x (CI: Pin mambaforge image) (pandas-dev#48401) Backport PR pandas-dev#48381: CI: Pin mambaforge image Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48229 on branch 1.5.x (TST: Test Nullable int floordiv by 0) (pandas-dev#48413) Backport PR pandas-dev#48229: TST: Test Nullable int floordiv by 0 Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48414 on branch 1.5.x (DOC: Add deprecation to is_categorical) (pandas-dev#48418) Backport PR pandas-dev#48414: DOC: Add deprecation to is_categorical Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> * Backport PR pandas-dev#48264 on branch 1.5.x (BUG: ArrowExtensionArray._from_* accepts pyarrow arrays) (pandas-dev#48422) * Backport PR pandas-dev#48264: BUG: ArrowExtensionArray._from_* accepts pyarrow arrays * Add missing import Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48411 on branch 1.5.x (REGR: get_loc for ExtensionEngine not returning bool indexer for na) (pandas-dev#48430) Backport PR pandas-dev#48411: REGR: get_loc for ExtensionEngine not returning bool indexer for na Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48419 on branch 1.5.x (BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column) (pandas-dev#48441) Backport PR pandas-dev#48419: BUG: ensure to return writable buffer in __dataframe__ interchange for categorical column Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48444 on branch 1.5.x (CI: Pin ipython version) (pandas-dev#48449) Backport PR pandas-dev#48444: CI: Pin ipython version Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48380 on branch 1.5.x (DOC: Clarify that objects dtype takes precedence in where) (pandas-dev#48445) * Backport PR pandas-dev#48380: DOC: Clarify that objects dtype takes precedence in where * Update generic.py Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Manual Backport PR pandas-dev#48427 on branch 1.5.x (BLD: Refactor Dockerfile to not install dev enviornment on base) (pandas-dev#48450) Backport PR pandas-dev#48427: BLD: Refactor Dockerfile to not install dev enviornment on base * Backport PR pandas-dev#48426 on branch 1.5.x (BUG: Column.size should be a method) (pandas-dev#48465) Backport PR pandas-dev#48426: BUG: Column.size should be a method Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48398 on branch 1.5.x (WARN: Avoid FutureWarnings in tests) (pandas-dev#48420) * Backport PR pandas-dev#48398: WARN: Avoid FutureWarnings in tests * Update Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48416 on branch 1.5.x (REF: ensure to apply suffixes before concat step in merge code) (pandas-dev#48470) Backport PR pandas-dev#48416: REF: ensure to apply suffixes before concat step in merge code Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48354 on branch 1.5.x (CI: Bump timeout to 180 minutes) (pandas-dev#48474) Backport PR pandas-dev#48354: CI: Bump timeout to 180 minutes Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48472 on branch 1.5.x (PERF: keep using ObjectEngine for ExtensionArrays for 1.5) (pandas-dev#48486) Backport PR pandas-dev#48472: PERF: keep using ObjectEngine for ExtensionArrays for 1.5 Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48473 on branch 1.5.x (REGR: .describe on unsigned dtypes results in object) (pandas-dev#48501) Backport PR pandas-dev#48473: REGR: .describe on unsigned dtypes results in object Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48443 on branch 1.5.x (BUG: Fix pyarrow groupby tests) (pandas-dev#48494) * BUG: Fix pyarrow groupby tests (pandas-dev#48443) # Conflicts: # pandas/tests/extension/test_arrow.py * CI: Fix failing tests (pandas-dev#48493) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48490 on branch 1.5.x (CI: Use -j1 for python-dev build to avoid flaky build error) (pandas-dev#48517) Backport PR pandas-dev#48490: CI: Use -j1 for python-dev build to avoid flaky build error Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Manual Backport PR pandas-dev#48428 on branch 1.5.x (BUG/TST: fix a bunch of arraymanager+pyarrow tests) (pandas-dev#48518) Backport PR pandas-dev#48428: BUG/TST: fix a bunch of arraymanager+pyarrow tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48525 on branch 1.5.x (CI: Fix py311 builds different exception message) (pandas-dev#48529) Backport PR pandas-dev#48525: CI: Fix py311 builds different exception message Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48489 on branch 1.5.x (BUG: fix test_arrow.py tests) (pandas-dev#48532) Backport PR pandas-dev#48489: BUG: fix test_arrow.py tests Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48543 on branch 1.5.x (DOC: Update footer and include OVH) (pandas-dev#48548) Backport PR pandas-dev#48543: DOC: Update footer and include OVH Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Manual Backport PR pandas-dev#48417 on branch 1.5.x (Revert set_index inplace and copy keyword changes) (pandas-dev#48552) Backport PR pandas-dev#48417: Revert set_index inplace and copy keyword changes Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> * Backport PR pandas-dev#48550 on branch 1.5.x (TST: remove 2D tests irrelevant for pyarrow) (pandas-dev#48554) Backport PR pandas-dev#48550: TST: remove 2D tests irrelevant for pyarrow Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48556 on branch 1.5.x (DOC: Fix docs footer) (pandas-dev#48558) Backport PR pandas-dev#48556: DOC: Fix docs footer Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48562 on branch 1.5.x (TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480)) (pandas-dev#48564) Backport PR pandas-dev#48562: TST: Testing that no warnings are emitted and that inplace fillna produces the correct result (GH48480) Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> * Backport PR pandas-dev#48563 on branch 1.5.x (DOC: Fix read_sas 1.5 release notes) (pandas-dev#48565) Backport PR pandas-dev#48563: DOC: Fix read_sas 1.5 release notes Co-authored-by: Jonas Haag <jonas@lophus.org> * Backport PR pandas-dev#48539 on branch 1.5.x (REGR: groupby doesn't identify null values when sort=False) (pandas-dev#48568) Backport PR pandas-dev#48539: REGR: groupby doesn't identify null values when sort=False Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48555 on branch 1.5.x (DEPR: Series.astype(np.datetime64)) (pandas-dev#48569) Backport PR pandas-dev#48555: DEPR: Series.astype(np.datetime64) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> * Backport PR pandas-dev#48557 on branch 1.5.x (WEB: Add new footer to web) (pandas-dev#48571) Backport PR pandas-dev#48557: WEB: Add new footer to web Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48285 on branch 1.5.x (WEB: Unpin pydata sphinx theme) (pandas-dev#48585) Backport PR pandas-dev#48285: WEB: Unpin pydata sphinx theme Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48572 on branch 1.5.x (DOC: Fixing styles for the dark theme) (pandas-dev#48584) Backport PR pandas-dev#48572: DOC: Fixing styles for the dark theme Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48397 on branch 1.5.x (WARN: Remove false positive warning for iloc inplaceness) (pandas-dev#48583) Backport PR pandas-dev#48397: WARN: Remove false positive warning for iloc inplaceness Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48587 on branch 1.5.x (Fix `series.str.startswith(tuple)`) (pandas-dev#48593) Backport PR pandas-dev#48587: Fix `series.str.startswith(tuple)` Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> * Backport PR pandas-dev#48601 on branch 1.5.x (CI: Fix matplolib release issues) (pandas-dev#48617) Backport PR pandas-dev#48601: CI: Fix matplolib release issues Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48623 on branch 1.5.x (REGR/DOC: Docs left navbar broke) (pandas-dev#48625) Backport PR pandas-dev#48623: REGR/DOC: Docs left navbar broke Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48619 on branch 1.5.x (REGR: Loc.setitem with enlargement raises for nested data) (pandas-dev#48629) Backport PR pandas-dev#48619: REGR: Loc.setitem with enlargement raises for nested data Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48627 on branch 1.5.x (DOC: Last changes to release notes for 1.5.0 release) (pandas-dev#48630) Backport PR pandas-dev#48627: DOC: Last changes to release notes for 1.5.0 release Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * RLS: 1.5.0 * Backport PR pandas-dev#48642 on branch 1.5.x (DOC: Add release notes for 1.5.1) (pandas-dev#48647) Backport PR pandas-dev#48642: DOC: Add release notes for 1.5.1 Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48639 on branch 1.5.x (CI: Fix directory name for published prod docs) (pandas-dev#48648) Backport PR pandas-dev#48639: CI: Fix directory name for published prod docs Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48651 on branch 1.5.x (REGR: TextIOWrapper raising an error in read_csv) (pandas-dev#48666) Backport PR pandas-dev#48651: REGR: TextIOWrapper raising an error in read_csv Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> * Backport PR pandas-dev#48599 on branch 1.5.x (DOC: Add deprecation infos to deprecated functions) (pandas-dev#48690) Backport PR pandas-dev#48599: DOC: Add deprecation infos to deprecated functions Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48620 on branch 1.5.x (REGR: Performance decrease in factorize) (pandas-dev#48710) Backport PR pandas-dev#48620: REGR: Performance decrease in factorize Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48711 on branch 1.5.x (REGR: Regression in DataFrame.loc when setting df with all True indexer) (pandas-dev#48717) Backport PR pandas-dev#48711: REGR: Regression in DataFrame.loc when setting df with all True indexer Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48696 on branch 1.5.x (REGR: to_hdf raising AssertionError with boolean index) (pandas-dev#48716) Backport PR pandas-dev#48696: REGR: to_hdf raising AssertionError with boolean index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48734 on branch 1.5.x (REGR: Raise on invalid colormap for scatter plot) (pandas-dev#48744) Backport PR pandas-dev#48734: REGR: Raise on invalid colormap for scatter plot Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48713 on branch 1.5.x (BUG: pivot_table raising Future Warning with datetime column as index) (pandas-dev#48742) Backport PR pandas-dev#48713: BUG: pivot_table raising Future Warning with datetime column as index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48703 on branch 1.5.x (Added theme_switcher ) (pandas-dev#48741) Backport PR pandas-dev#48703: Added theme_switcher Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> * Backport PR pandas-dev#48697 on branch 1.5.x (REGR: None converted to NaN when enlarging Series) (pandas-dev#48745) Backport PR pandas-dev#48697: REGR: None converted to NaN when enlarging Series Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48702 on branch 1.5.x (REGR: dropna affects observed in groupby) (pandas-dev#48750) Backport PR pandas-dev#48702: REGR: dropna affects observed in groupby Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> * Backport PR pandas-dev#48782 on branch 1.5.x (REGR: describe raising when result contains NA) (pandas-dev#48793) Backport PR pandas-dev#48782: REGR: describe raising when result contains NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48662 on branch 1.5.x (BUG: Series.getitem not falling back to positional for bool index) (pandas-dev#48799) Backport PR pandas-dev#48662: BUG: Series.getitem not falling back to positional for bool index Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48751 on branch 1.5.x (WEB: Update link to datapythonista blog url) (pandas-dev#48798) Backport PR pandas-dev#48751: WEB: Update link to datapythonista blog url Co-authored-by: Marc Garcia <garcia.marc@gmail.com> * Backport PR pandas-dev#48608 on branch 1.5.x (REGR: assert_index_equal raising with non matching pd.NA) (pandas-dev#48800) * Backport PR pandas-dev#48608: REGR: assert_index_equal raising with non matching pd.NA Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48785 on branch 1.5.x (BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns) (pandas-dev#48807) Backport PR pandas-dev#48785: BUG: still emitting unnecessary FutureWarning in DataFrame.sort_values with sparse columns Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> * Backport PR pandas-dev#48693 on branch 1.5.x (ENH: Make deprecate_nonkeyword_arguments alter function signature) (pandas-dev#48795) Backport PR pandas-dev#48693: ENH: Make deprecate_nonkeyword_arguments alter function signature Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * Backport PR pandas-dev#48579 on branch 1.5.x (BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func) (pandas-dev#48817) BUG: Fix calling groupBy(...).apply(func) on an empty dataframe invokes func (pandas-dev#48579) (cherry picked from commit 8b0ad71) Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> * Backport PR pandas-dev#48760 on branch 1.5.x (REGR: groupby.size with axis=1 doesn't return a Series) (pandas-dev#48825) * Backport PR pandas-dev#48820 on branch 1.5.x (BUG: to_datetime(format='...%f') parses nanoseconds) (pandas-dev#48860) BUG: to_datetime(format='...%f') parses nanoseconds (pandas-dev#48820) Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48850 on branch 1.5.x (TYP: Fix typing errors caused by new numpy) (pandas-dev#48859) * Backport PR pandas-dev#48790 on branch 1.5.x (Created icons for dark theme) (pandas-dev#48875) Backport PR pandas-dev#48790: Created icons for dark theme Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> * Backport PR pandas-dev#48805 on branch 1.5.x (Added padding and fixed columns for sponsor logos in mobile view) (pandas-dev#48874) Backport PR pandas-dev#48805: Added padding and fixed columns for sponsor logos in mobile view Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com> * Backport PR pandas-dev#48866 on branch 1.5.x (REGR: replace replacing wrong values with inplace and datetime) (pandas-dev#48872) Backport PR pandas-dev#48866: REGR: replace replacing wrong values with inplace and datetime Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48853 on branch 1.5.x (REGR: Avoid unnecessary warning when setting empty dataframe) (pandas-dev#48873) Backport PR pandas-dev#48853: REGR: Avoid unnecessary warning when setting empty dataframe Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> * Backport PR pandas-dev#48833 on branch 1.5.x (BUG: ArrowExtensionArray compared to invalid object not raising) (pandas-dev#48878) Backport PR pandas-dev#48833: BUG: ArrowExtensionArray compared to invalid object not raising Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48686 on branch 1.5.x (BUG: to_datetime(tz_mix, utc=True) converts to UTC) (pandas-dev#48882) Backport PR pandas-dev#48686: BUG: to_datetime(tz_mix, utc=True) converts to UTC Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * Backport PR pandas-dev#48736 on branch 1.5.x ( BUG: AttributeError: 'function' object has no attribute 'currentframe') (pandas-dev#48887) * Backport PR pandas-dev#48797 on branch 1.5.x (REGR: fix df.apply with keyword non-zero axis) (pandas-dev#48886) REGR: fix df.apply with keyword non-zero axis (pandas-dev#48797) Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> * add pandas[foo] throughout to explain the optional extras process Also `Recommended dependencies` to `Performance dependencies (recommended)` * extend optional_extra`all` to cover tests and redundant packages * add tzdata from pandas 1.5.0 * move summary to latest whatsnew doc Code is now stable and updated. Attempt a port from doc/source/whatsnew/v1.5.0.rst over to latest document doc/source/whatsnew/v1.5.1.rst. * explicitly pair packages to optional_extra in installs * fix sphinx errors in install.rst extra padding on column + empty return before table * add: pytest-asyncio>=0.19.0 pytest-asyncio>=0.19.0 Closes pandas-dev#48361. No version guidance available so went for latest. No-one should be messing around with tests without modern installs. * fsspec note * repin pytest-asyncio>=0.17.0 matches pytest-asyncio>=0.17.0 in ci/deps/actions-38-minimum_versions.yaml * move summary from whatsnew/v1.5.1 to v1.6.0 plus add (:issue:`48361`) resolution note * linting double-backtick ``test`` underline tilde match title length * Add `clipboard` as optional extra * Review comments - fss optional extra - better numba description * remove unneeded comment * fix: leave 1.5.1.rst unchanged by this PR * Update doc/source/whatsnew/v1.5.1.rst Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> * pyarrow bump 1.0.1 -> 6.0.0 Co-authored-by: Matthew Roeschke <emailformattr@gmail.com> Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com> Co-authored-by: MeeseeksMachine <39504233+meeseeksmachine@users.noreply.github.com> Co-authored-by: Matthew Roeschke <10647082+mroeschke@users.noreply.github.com> Co-authored-by: Patrick Hoefler <61934744+phofl@users.noreply.github.com> Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com> Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com> Co-authored-by: jbrockmendel <jbrockmendel@gmail.com> Co-authored-by: Marc Garcia <garcia.marc@gmail.com> Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com> Co-authored-by: RaphSku <45042665+RaphSku@users.noreply.github.com> Co-authored-by: Jonas Haag <jonas@lophus.org> Co-authored-by: Janosh Riebesell <janosh.riebesell@gmail.com> Co-authored-by: Pandas Development Team <pandas-dev@python.org> Co-authored-by: Torsten Wörtwein <twoertwein@users.noreply.github.com> Co-authored-by: Deepak Sirohiwal <38135521+deepaksirohiwal@users.noreply.github.com> Co-authored-by: Marco Edward Gorelli <33491632+MarcoGorelli@users.noreply.github.com> Co-authored-by: Shantanu <12621235+hauntsaninja@users.noreply.github.com> Co-authored-by: Dennis Chukwunta <chuksmcdennis@yahoo.com> Co-authored-by: Lorenzo Vainigli <lorenzovngl@gmail.com> Co-authored-by: Amay Patel <92037532+amay-patel@users.noreply.github.com>
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Backport PR #48734: REGR: Raise on invalid colormap for scatter plot