Add mode3::AssembyGraph::run4. #497
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| jobs: | |
| ubuntu-22-04: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Install-prerequisites | |
| run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh | |
| - name: Build-ubuntu-22.04 | |
| run: | | |
| lsb_release -a | |
| tar -cvf shasta-docs.tar --transform='s/docs/shastaDocs/' docs | |
| mkdir shasta-build | |
| cd shasta-build | |
| cmake .. -DBUILD_ID="Shasta unreleased test build newer than release 0.13.0 at commit "$GITHUB_SHA | |
| # cmake .. -DBUILD_ID="Shasta Release 0.13.0" | |
| make -j 2 all | |
| make install/strip | |
| mv shasta-install shasta-Ubuntu-22.04 | |
| tar -cvf shasta-Ubuntu-22.04.tar shasta-Ubuntu-22.04 | |
| - name: Test-ubuntu-22.04 | |
| run: | | |
| sudo apt install gzip | |
| gunzip tests/TinyTest.fasta.gz | |
| shasta-build/shasta-Ubuntu-22.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta | |
| ls -l ShastaRun/Assembly.fasta | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-docs.tar | |
| path: shasta-docs.tar | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-Linux | |
| path: shasta-build/shasta-Ubuntu-22.04/bin/shasta | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-Ubuntu-22.04.tar | |
| path: shasta-build/shasta-Ubuntu-22.04.tar | |
| ubuntu-24-04: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Install-prerequisites | |
| run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh | |
| - name: Build-ubuntu-24.04 | |
| run: | | |
| lsb_release -a | |
| tar -cvf shasta-docs.tar --transform='s/docs/shastaDocs/' docs | |
| mkdir shasta-build | |
| cd shasta-build | |
| cmake .. -DBUILD_ID="Shasta unreleased test build newer than release 0.13.0 at commit "$GITHUB_SHA | |
| # cmake .. -DBUILD_ID="Shasta Release 0.13.0" | |
| make -j 2 all | |
| make install/strip | |
| mv shasta-install shasta-Ubuntu-24.04 | |
| tar -cvf shasta-Ubuntu-24.04.tar shasta-Ubuntu-24.04 | |
| - name: Test-ubuntu-24.04 | |
| run: | | |
| sudo apt install gzip | |
| gunzip tests/TinyTest.fasta.gz | |
| shasta-build/shasta-Ubuntu-24.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta | |
| ls -l ShastaRun/Assembly.fasta | |