Create built-in assembly configurations corresponding to the configur… #499
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name: build | |
on: | |
push: | |
branches: | |
- '*' | |
jobs: | |
ubuntu-22-04: | |
runs-on: ubuntu-22.04 | |
steps: | |
- uses: actions/checkout@master | |
- name: Install-prerequisites | |
run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh | |
- name: Build-ubuntu-22.04 | |
run: | | |
lsb_release -a | |
tar -cvf shasta-docs.tar --transform='s/docs/shastaDocs/' docs | |
mkdir shasta-build | |
cd shasta-build | |
cmake .. -DBUILD_ID="Shasta unreleased test build newer than release 0.13.0 at commit "$GITHUB_SHA | |
# cmake .. -DBUILD_ID="Shasta Release 0.13.0" | |
make -j 2 all | |
make install/strip | |
mv shasta-install shasta-Ubuntu-22.04 | |
tar -cvf shasta-Ubuntu-22.04.tar shasta-Ubuntu-22.04 | |
- name: Test-ubuntu-22.04 | |
run: | | |
sudo apt install gzip | |
gunzip tests/TinyTest.fasta.gz | |
shasta-build/shasta-Ubuntu-22.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta | |
ls -l ShastaRun/Assembly.fasta | |
- uses: actions/upload-artifact@master | |
with: | |
name: shasta-docs.tar | |
path: shasta-docs.tar | |
- uses: actions/upload-artifact@master | |
with: | |
name: shasta-Linux | |
path: shasta-build/shasta-Ubuntu-22.04/bin/shasta | |
- uses: actions/upload-artifact@master | |
with: | |
name: shasta-Ubuntu-22.04.tar | |
path: shasta-build/shasta-Ubuntu-22.04.tar | |
ubuntu-24-04: | |
runs-on: ubuntu-24.04 | |
steps: | |
- uses: actions/checkout@master | |
- name: Install-prerequisites | |
run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh | |
- name: Build-ubuntu-24.04 | |
run: | | |
lsb_release -a | |
tar -cvf shasta-docs.tar --transform='s/docs/shastaDocs/' docs | |
mkdir shasta-build | |
cd shasta-build | |
cmake .. -DBUILD_ID="Shasta unreleased test build newer than release 0.13.0 at commit "$GITHUB_SHA | |
# cmake .. -DBUILD_ID="Shasta Release 0.13.0" | |
make -j 2 all | |
make install/strip | |
mv shasta-install shasta-Ubuntu-24.04 | |
tar -cvf shasta-Ubuntu-24.04.tar shasta-Ubuntu-24.04 | |
- name: Test-ubuntu-24.04 | |
run: | | |
sudo apt install gzip | |
gunzip tests/TinyTest.fasta.gz | |
shasta-build/shasta-Ubuntu-24.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta | |
ls -l ShastaRun/Assembly.fasta | |