Merge pull request #538 from pato-ontology/091022-release

091022 release
pato-ontology · Nov 9, 2022 · 4bf7474 · 4bf7474
2 parents de625f9 + 5222f00
commit 4bf7474
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Showing 12 changed files with 285 additions and 69 deletions.
diff --git a/pato-base.json b/pato-base.json
@@ -9990,6 +9990,11 @@
  "pred": "is_a",
  "sub": "http://purl.obolibrary.org/obo/PATO_0070062"
  },
+ {
+ "obj": "http://purl.obolibrary.org/obo/PATO_0010006",
+ "pred": "is_a",
+ "sub": "http://purl.obolibrary.org/obo/PATO_0070063"
+ },
  {
  "obj": "http://purl.obolibrary.org/obo/PATO_0015002",
  "pred": "is_a",
@@ -14615,10 +14620,10 @@
  },
  {
  "pred": "http://www.w3.org/2002/07/owl#versionInfo",
- "val": "2022-11-03"
+ "val": "2022-11-09"
  }
  ],
- "version": "http://purl.obolibrary.org/obo/pato/releases/2022-11-03/pato-base.json"
+ "version": "http://purl.obolibrary.org/obo/pato/releases/2022-11-09/pato-base.json"
  },
  "nodes": [
  {
@@ -81967,6 +81972,29 @@
  },
  "type": "CLASS"
  },
+ {
+ "id": "http://purl.obolibrary.org/obo/PATO_0070063",
+ "lbl": "monostratified dendrite cell morphology",
+ "meta": {
+ "basicPropertyValues": [
+ {
+ "pred": "http://purl.org/dc/terms/contributor",
+ "val": "https://orcid.org/0000-0001-7258-9596"
+ },
+ {
+ "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+ "val": "quality"
+ }
+ ],
+ "definition": {
+ "val": "A cell morphology that inheres in neurons with dendrites that stratify at one and only one location.",
+ "xrefs": [
+ "PMID:34093409"
+ ]
+ }
+ },
+ "type": "CLASS"
+ },
  {
  "id": "http://purl.obolibrary.org/obo/PATO_0070064",
  "lbl": "dendritic field size",

diff --git a/pato-base.obo b/pato-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: pato/releases/2022-11-03/pato-base.owl
+data-version: pato/releases/2022-11-09/pato-base.owl
 subsetdef: abnormal_slim "Abnormal/normal slim"
 subsetdef: absent_slim "Absent/present slim"
 subsetdef: attribute_slim "Attribute slim"
@@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
 property_value: IAO:0000700 PATO:0000001
-property_value: owl:versionInfo "2022-11-03" xsd:string
+property_value: owl:versionInfo "2022-11-09" xsd:string
 
 [Term]
 id: CL:0000000
@@ -22480,6 +22480,13 @@ def: "A cell morphology that inheres in neurons with dendrites that stratify at
 is_a: PATO:0010006 ! cell morphology
 property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596
 
+[Term]
+id: PATO:0070063
+name: monostratified dendrite cell morphology
+def: "A cell morphology that inheres in neurons with dendrites that stratify at one and only one location." [PMID:34093409]
+is_a: PATO:0010006 ! cell morphology
+property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-7258-9596
+
 [Term]
 id: PATO:0070064
 name: dendritic field size

diff --git a/pato-base.owl b/pato-base.owl
@@ -12,15 +12,15 @@
  xmlns:terms="http://purl.org/dc/terms/"
  xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
  <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pato/pato-base.owl">
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2022-11-03/pato-base.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2022-11-09/pato-base.owl"/>
  <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
  <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An ontology of phenotypic qualities (properties, attributes or characteristics).</dc:description>
  <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO - the Phenotype And Trait Ontology</dc:title>
  <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
  <terms:license rdf:resource="https://creativecommons.org/licenses/by/3.0/"/>
  <oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:default-namespace>
  <oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
- <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-03</owl:versionInfo>
+ <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-09</owl:versionInfo>
  </owl:Ontology>
 
 
@@ -54383,6 +54383,25 @@ height&apos;).</rdfs:comment>
 
 
 
+ <!-- http://purl.obolibrary.org/obo/PATO_0070063 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0070063">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0010006"/>
+ <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell morphology that inheres in neurons with dendrites that stratify at one and only one location.</obo:IAO_0000115>
+ <terms:contributor rdf:resource="https://orcid.org/0000-0001-7258-9596"/>
+ <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0070063</oboInOwl:id>
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monostratified dendrite cell morphology</rdfs:label>
+ </owl:Class>
+ <owl:Axiom>
+ <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0070063"/>
+ <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+ <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cell morphology that inheres in neurons with dendrites that stratify at one and only one location.</owl:annotatedTarget>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:34093409</oboInOwl:hasDbXref>
+ </owl:Axiom>
+
+
+
  <!-- http://purl.obolibrary.org/obo/PATO_0070064 -->
 
  <owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0070064">

diff --git a/pato-full.json b/pato-full.json
@@ -100645,6 +100645,11 @@
  "pred": "is_a",
  "sub": "http://purl.obolibrary.org/obo/PATO_0070062"
  },
+ {
+ "obj": "http://purl.obolibrary.org/obo/PATO_0010006",
+ "pred": "is_a",
+ "sub": "http://purl.obolibrary.org/obo/PATO_0070063"
+ },
  {
  "obj": "http://purl.obolibrary.org/obo/PATO_0015002",
  "pred": "is_a",
@@ -212098,10 +212103,10 @@
  },
  {
  "pred": "http://www.w3.org/2002/07/owl#versionInfo",
- "val": "2022-11-03"
+ "val": "2022-11-09"
  }
  ],
- "version": "http://purl.obolibrary.org/obo/pato/releases/2022-11-03/pato-full.json"
+ "version": "http://purl.obolibrary.org/obo/pato/releases/2022-11-09/pato-full.json"
  },
  "nodes": [
  {
@@ -508188,6 +508193,29 @@
  },
  "type": "CLASS"
  },
+ {
+ "id": "http://purl.obolibrary.org/obo/PATO_0070063",
+ "lbl": "monostratified dendrite cell morphology",
+ "meta": {
+ "basicPropertyValues": [
+ {
+ "pred": "http://purl.org/dc/terms/contributor",
+ "val": "https://orcid.org/0000-0001-7258-9596"
+ },
+ {
+ "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+ "val": "quality"
+ }
+ ],
+ "definition": {
+ "val": "A cell morphology that inheres in neurons with dendrites that stratify at one and only one location.",
+ "xrefs": [
+ "PMID:34093409"
+ ]
+ }
+ },
+ "type": "CLASS"
+ },
  {
  "id": "http://purl.obolibrary.org/obo/PATO_0070064",
  "lbl": "dendritic field size",

diff --git a/pato-full.obo b/pato-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: pato/releases/2022-11-03/pato-full.owl
+data-version: pato/releases/2022-11-09/pato-full.owl
 subsetdef: 1_STAR ""
 subsetdef: 2_STAR ""
 subsetdef: 3_STAR ""
@@ -88,7 +88,7 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of phen
 property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And Trait Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
 property_value: IAO:0000700 PATO:0000001
-property_value: owl:versionInfo "2022-11-03" xsd:string
+property_value: owl:versionInfo "2022-11-09" xsd:string
 
 [Term]
 id: BFO:0000002
@@ -103716,6 +103716,13 @@ def: "A cell morphology that inheres in neurons with dendrites that stratify at
 is_a: PATO:0010006 ! cell morphology
 relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
 
+[Term]
+id: PATO:0070063
+name: monostratified dendrite cell morphology
+def: "A cell morphology that inheres in neurons with dendrites that stratify at one and only one location." [PMID:34093409]
+is_a: PATO:0010006 ! cell morphology
+relationship: dc-contributor https://orcid.org/0000-0001-7258-9596
+
 [Term]
 id: PATO:0070064
 name: dendritic field size