Updated to use pyproject.toml, pyright, etc. All modern stuff.

.github/workflows/release.yml

@@ -10,9 +10,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Release
-        uses: patrick-kidger/action_update_python_project@v1
+        uses: patrick-kidger/action_update_python_project@v2
         with:
-            python-version: "3.8"
+            python-version: "3.11"
             test-script: |
                 python -m pip install pytest jax jaxlib sympy equinox
                 cp -r ${{ github.workspace }}/tests ./tests

.github/workflows/run_tests.yml

@@ -7,7 +7,7 @@ jobs:
   run-tests:
     strategy:
       matrix:
-        python-version: [ 3.7, 3.8, 3.9 ]
+        python-version: [ 3.9 ]
         os: [ ubuntu-latest ]
       fail-fast: false
     runs-on: ${{ matrix.os }}

.pre-commit-config.yaml

@@ -1,33 +1,23 @@
-# Copyright 2022 Google LLC
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
 repos:
   - repo: https://github.com/ambv/black
     rev: 22.3.0
     hooks:
     - id: black
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.2.3
+  - repo: https://github.com/charliermarsh/ruff-pre-commit
+    rev: 'v0.0.255'
     hooks:
-    - id: nbqa-black
-    - id: nbqa-isort 
-    - id: nbqa-flake8
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.10.1
+      - id: ruff
+        args: ["--fix"]
+  - repo: https://github.com/RobertCraigie/pyright-python
+    rev: v1.1.315
     hooks:
-    - id: isort
-  - repo: https://github.com/pycqa/flake8
-    rev: 4.0.1
+    - id: pyright
+      additional_dependencies: ["equinox", "jax", "sympy"]
+  - repo: https://github.com/nbQA-dev/nbQA
+    rev: 1.6.3
     hooks:
-    - id: flake8
+    - id: nbqa-black
+      additional_dependencies: [ipython==8.12, black]
+    - id: nbqa-ruff 
+      args: ["--ignore=I001"]
+      additional_dependencies: [ipython==8.12, ruff]

pyproject.toml

@@ -0,0 +1,48 @@
+[project]
+name = "sympy2jax"
+version = "0.0.4"
+description = "Turn SymPy expressions into trainable JAX expressions."
+readme = "README.md"
+requires-python ="~=3.9"
+license = {file = "LICENSE"}
+authors = [
+  {name = "Patrick Kidger", email = "contact@kidger.site"},
+]
+keywords = ["jax", "sympy", "equinox"]
+classifiers = [
+    "Development Status :: 3 - Alpha",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: Apache Software License",
+    "Natural Language :: English",
+    "Programming Language :: Python :: 3",
+    "Topic :: Scientific/Engineering :: Artificial Intelligence",
+    "Topic :: Scientific/Engineering :: Mathematics",
+]
+urls = {repository = "https://github.com/google/sympy2jax" }
+dependencies = ["equinox>=0.5.3", "jax>=0.3.4", "sympy>=1.7.1"]
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[tool.hatch.build]
+include = ["sympy2jax/*"]
+
+[tool.pytest.ini_options]
+addopts = "--jaxtyping-packages=symyp2jax,beartype.beartype(conf=beartype.BeartypeConf(strategy=beartype.BeartypeStrategy.On))"
+
+[tool.ruff]
+select = ["E", "F", "I001"]
+ignore = ["E402", "E721", "E731", "E741", "F722"]
+ignore-init-module-imports = true
+fixable = ["I001", "F401"]
+
+[tool.ruff.isort]
+combine-as-imports = true
+lines-after-imports = 2
+extra-standard-library = ["typing_extensions"]
+order-by-type = false
+
+[tool.pyright]
+reportIncompatibleMethodOverride = true
+include = ["sympy2jax", "tests"]

sympy2jax/__init__.py

@@ -12,7 +12,11 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-from .sympy_module import concatenate, stack, SymbolicModule
+from .sympy_module import (
+    concatenate as concatenate,
+    stack as stack,
+    SymbolicModule as SymbolicModule,
+)
 
 
 __version__ = "0.0.4"

sympy2jax/sympy_module.py

@@ -15,7 +15,8 @@
 import abc
 import collections as co
 import functools as ft
-from typing import Any, Callable, Optional
+from collections.abc import Callable, Mapping
+from typing import Any, cast, Optional
 
 import equinox as eqx
 import jax
@@ -26,8 +27,8 @@
 
 PyTree = Any
 
-concatenate = sympy.Function("concatenate")
-stack = sympy.Function("stack")
+concatenate: Callable = sympy.Function("concatenate")  # pyright: ignore
+stack: Callable = sympy.Function("stack")  # pyright: ignore
 
 
 def _reduce(fn):
@@ -96,9 +97,16 @@ def fn_(*args):
 assert len(_reverse_lookup) == len(_lookup)
 
 
+def _item(x):
+    if eqx.is_array(x):
+        return x.item()
+    else:
+        return x
+
+
 class _AbstractNode(eqx.Module):
     @abc.abstractmethod
-    def __call__(self, memodict: dict):
+    def __call__(self, memodict: dict) -> jax.typing.ArrayLike:
         ...
 
     @abc.abstractmethod
@@ -107,14 +115,14 @@ def sympy(self, memodict: dict, func_lookup: dict) -> sympy.Expr:
 
     # Comparisons based on identity
     __hash__ = object.__hash__
-    __eq__ = object.__eq__
+    __eq__ = object.__eq__  # pyright: ignore
 
 
 class _Symbol(_AbstractNode):
     _name: str
 
     def __init__(self, expr: sympy.Expr):
-        self._name = expr.name
+        self._name = expr.name  # pyright: ignore
 
     def __call__(self, memodict: dict):
         try:
@@ -135,7 +143,7 @@ def _maybe_array(val, make_array):
 
 
 class _Integer(_AbstractNode):
-    _value: jnp.ndarray
+    _value: jax.typing.ArrayLike
 
     def __init__(self, expr: sympy.Expr, make_array: bool):
         assert isinstance(expr, sympy.Integer)
@@ -146,11 +154,11 @@ def __call__(self, memodict: dict):
 
     def sympy(self, memodict: dict, func_lookup: dict) -> sympy.Expr:
         # memodict not needed as sympy deduplicates internally
-        return sympy.Integer(self._value.item())
+        return sympy.Integer(_item(self._value))
 
 
 class _Float(_AbstractNode):
-    _value: jnp.ndarray
+    _value: jax.typing.ArrayLike
 
     def __init__(self, expr: sympy.Expr, make_array: bool):
         assert isinstance(expr, sympy.Float)
@@ -161,12 +169,12 @@ def __call__(self, memodict: dict):
 
     def sympy(self, memodict: dict, func_lookup: dict) -> sympy.Expr:
         # memodict not needed as sympy deduplicates internally
-        return sympy.Float(self._value.item())
+        return sympy.Float(_item(self._value))
 
 
 class _Rational(_AbstractNode):
-    _numerator: jnp.ndarray
-    _denominator: jnp.ndarray
+    _numerator: jax.typing.ArrayLike
+    _denominator: jax.typing.ArrayLike
 
     def __init__(self, expr: sympy.Expr, make_array: bool):
         assert isinstance(expr, sympy.Rational)
@@ -185,22 +193,25 @@ def __call__(self, memodict: dict):
 
     def sympy(self, memodict: dict, func_lookup: dict) -> sympy.Expr:
         # memodict not needed as sympy deduplicates internally
-        return sympy.Integer(self._numerator) / sympy.Integer(self._denominator)
+        return sympy.Integer(_item(self._numerator)) / sympy.Integer(
+            _item(self._denominator)
+        )
 
 
 class _Func(_AbstractNode):
     _func: Callable
     _args: list
 
     def __init__(
-        self, expr: sympy.Expr, memodict: dict, func_lookup: dict, make_array: bool
+        self, expr: sympy.Expr, memodict: dict, func_lookup: Mapping, make_array: bool
     ):
         try:
             self._func = func_lookup[expr.func]
         except KeyError as e:
             raise KeyError(f"Unsupported Sympy type {type(expr)}") from e
         self._args = [
-            _sympy_to_node(arg, memodict, func_lookup, make_array) for arg in expr.args
+            _sympy_to_node(cast(sympy.Expr, arg), memodict, func_lookup, make_array)
+            for arg in expr.args
         ]
 
     def __call__(self, memodict: dict):
@@ -226,7 +237,7 @@ def sympy(self, memodict: dict, func_lookup: dict) -> sympy.Expr:
 
 
 def _sympy_to_node(
-    expr: sympy.Expr, memodict: dict, func_lookup: dict, make_array: bool
+    expr: sympy.Expr, memodict: dict, func_lookup: Mapping, make_array: bool
 ) -> _AbstractNode:
     try:
         return memodict[expr]
@@ -258,9 +269,7 @@ def __init__(
         expressions: PyTree,
         extra_funcs: Optional[dict] = None,
         make_array: bool = True,
-        **kwargs,
     ):
-        super().__init__(**kwargs)
         if extra_funcs is None:
             lookup = _lookup
             self.has_extra_funcs = False
@@ -278,7 +287,8 @@ def __init__(
     def sympy(self) -> sympy.Expr:
         if self.has_extra_funcs:
             raise NotImplementedError(
-                "SymbolicModule cannot be converted back to SymPy if `extra_funcs` is passed"
+                "SymbolicModule cannot be converted back to SymPy if `extra_funcs` "
+                "is passed."
             )
         memodict = dict()
         return jax.tree_map(