fix sysctl.h + BWA version

pavelToman · Feb 3, 2025 · d2f5b59 · d2f5b59
1 parent 8108e12
commit d2f5b59
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/easybuild/easyconfigs/v/Verkko/Verkko-2.2.1-foss-2023a.eb b/easybuild/easyconfigs/v/Verkko/Verkko-2.2.1-foss-2023a.eb
@@ -24,7 +24,7 @@ dependencies = [
     ('MashMap', '3.1.3'),
     ('GraphAligner', '1.0.20'),
     ('Winnowmap', '2.03'),
-    ('BWA', '0.7.18'),
+    ('BWA', '0.7.17'),
     ('minimap2', '2.26'),
     ('SAMtools', '1.18'),
     ('seqtk', '1.4'),

diff --git a/easybuild/easyconfigs/w/Winnowmap/Winnowmap-2.03-GCCcore-12.3.0.eb b/easybuild/easyconfigs/w/Winnowmap/Winnowmap-2.03-GCCcore-12.3.0.eb
@@ -14,6 +14,10 @@ sources = ['v%(version)s.tar.gz']
 checksums = ['f6375960ee2184b68c0f56d3ca95e12ec3218f9e44aeecbdb14f85f581112c83']
 
 builddependencies = [('binutils', '2.40')]
+dependencies = [('jemalloc', '5.3.0')]
+
+# fix - not use sysctl.h - not works on RHEL9 systems
+prebuildopts = "sed -i '36,39d' ext/meryl/src/utility/src/utility/system.C && "
 
 files_to_copy = ['bin', 'lib']