bugfix: fix EAR deployment failure when multiple WARs use multible CD…

…I-enabled library JARs

appserver/deployment/javaee-full/src/main/java/org/glassfish/javaee/full/deployment/EarDeployer.java

@@ -37,6 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
+// Portions Copyright [2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.javaee.full.deployment;
 
@@ -101,7 +102,7 @@
 @Service
 @PerLookup
 public class EarDeployer implements Deployer {
-
+    public static final String PER_BDA_METADATA_KEY = "[PerBDA]";
     //    private static final Class GLASSFISH_APPCLIENT_GROUP_FACADE_CLASS =
 //            org.glassfish.appclient.client.AppClientGroupFacade.class;
 // Currently using a string instead of a Class constant to avoid a circular
@@ -457,15 +458,21 @@ public <U extends OpsParams> U getCommandParameters(Class<U> commandParametersTy
         @Override
         public void addTransientAppMetaData(String metaDataKey,
                                             Object metaData) {
-            context.addTransientAppMetaData(metaDataKey,
-                metaData);
+            if (metaDataKey.startsWith(PER_BDA_METADATA_KEY)) {
+                super.addTransientAppMetaData(metaDataKey, metaData);
+            } else {
+                context.addTransientAppMetaData(metaDataKey, metaData);
+            }
         }
 
         @Override
         public <T> T getTransientAppMetaData(String metaDataKey,
                                              Class<T> metadataType) {
-            return context.getTransientAppMetaData(metaDataKey,
-                metadataType);
+            if (metaDataKey.startsWith(PER_BDA_METADATA_KEY)) {
+                return super.getTransientAppMetaData(metaDataKey, metadataType);
+            } else {
+                return context.getTransientAppMetaData(metaDataKey, metadataType);
+            }
         }
 
         @Override

appserver/web/weld-integration/src/main/java/org/glassfish/weld/ACLSingletonProvider.java

@@ -37,7 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  *
- * Portions Copyright [2017-2019] Payara Foundation and/or affiliates
+ * Portions Copyright [2017-2024] Payara Foundation and/or affiliates
  */
 
 package org.glassfish.weld;
@@ -108,11 +108,11 @@ public ClassLoader run()
       @Override
       public T get( String id )
       {
-        ClassLoader acl = getClassLoader();
-        T instance = store.get(acl);
+        T instance = storeById.get(id);
         if (instance == null)
         {
-            instance = storeById.get(id);
+            ClassLoader acl = getClassLoader();
+            instance = store.get(acl);
             if (instance == null) {
                 throw new IllegalStateException("Singleton not set for " + acl);
             }

appserver/web/weld-integration/src/main/java/org/glassfish/weld/BeanDeploymentArchiveImpl.java

@@ -37,7 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
-// Portions Copyright [2016-2022] [Payara Foundation and/or its affiliates]
+// Portions Copyright [2016-2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.weld;
 
@@ -64,7 +64,6 @@
 import java.io.InputStream;
 import java.net.MalformedURLException;
 import java.net.URI;
-import java.net.URISyntaxException;
 import java.net.URL;
 import java.net.URLClassLoader;
 import java.util.*;
@@ -102,9 +101,8 @@ public class BeanDeploymentArchiveImpl implements BeanDeploymentArchive {
 
     private BDAType bdaType = BDAType.UNKNOWN;
 
-    private DeploymentContext context;
-
-    private WeldBootstrap weldBootstrap;
+    DeploymentContext context;
+    WeldBootstrap weldBootstrap;
 
     private final Map<AnnotatedType<?>, InjectionTarget<?>> itMap = new HashMap<>();
 
@@ -272,7 +270,7 @@ public BeansXml getBeansXml() {
         if (beansXmlURLs.size() == 1) {
             result = weldBootstrap.parse(beansXmlURLs.get(0));
         } else {
-            // This method attempts to performs a merge, but loses some
+            // This method attempts to perform a merge, but loses some
             // information (e.g., version, bean-discovery-mode)
             result = weldBootstrap.parse(beansXmlURLs);
         }

appserver/web/weld-integration/src/main/java/org/glassfish/weld/BeanManagerNamingProxy.java

@@ -37,6 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
+// Portions Copyright [2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.weld;
 
@@ -93,7 +94,9 @@ public Object handle(String name) throws NamingException {
 
                 if( inv != null ) {
 
-                    JndiNameEnvironment componentEnv = compEnvManager.getJndiNameEnvironment(inv.getComponentId());
+                    JndiNameEnvironment componentEnv = inv.getComponentId() != null
+                            ? compEnvManager.getJndiNameEnvironment(inv.getComponentId())
+                            : null;
 
                     if( componentEnv != null ) {
 
@@ -112,7 +115,7 @@ public Object handle(String name) throws NamingException {
                         if( bundle != null ) {
                             BeanDeploymentArchive bda = weldDeployer.getBeanDeploymentArchiveForBundle(bundle);
                             if( bda != null ) {
-                                WeldBootstrap bootstrap = weldDeployer.getBootstrapForApp(bundle.getApplication());
+                                WeldBootstrap bootstrap = weldDeployer.getBootstrapForArchive(bda);
                                 //System.out.println("BeanManagerNamingProxy:: getting BeanManagerImpl for" + bda);
                                 beanManager = bootstrap.getManager(bda);
                             }
@@ -122,7 +125,6 @@ public Object handle(String name) throws NamingException {
                             throw new IllegalStateException("Cannot resolve bean manager");
                         }
 
-
                     } else {
                         throw new IllegalStateException("No invocation context found");
                     }
@@ -137,6 +139,4 @@ public Object handle(String name) throws NamingException {
 
         return beanManager;
     }
-
-
 }

appserver/web/weld-integration/src/main/java/org/glassfish/weld/DeploymentImpl.java

@@ -37,7 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
-// Portions Copyright [2016-2022] [Payara Foundation and/or its affiliates]
+// Portions Copyright [2016-2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.weld;
 
@@ -97,12 +97,12 @@ public class DeploymentImpl implements CDI11Deployment {
 
     // Keep track of our BDAs for this deployment
     private List<RootBeanDeploymentArchive> rarRootBdas;
-    private List<RootBeanDeploymentArchive> ejbRootBdas;
+    List<RootBeanDeploymentArchive> ejbRootBdas;
     private List<RootBeanDeploymentArchive> warRootBdas;
     private List<RootBeanDeploymentArchive> libJarRootBdas = null;
 
     private List<BeanDeploymentArchive> beanDeploymentArchives = new ArrayList<>();
-    private DeploymentContext context;
+    DeploymentContext context;
 
     // A convenience Map to get BDA for a given BDA ID
     private Map<String, BeanDeploymentArchive> idToBeanDeploymentArchive = new HashMap<>();
@@ -164,24 +164,80 @@ public DeploymentImpl(ReadableArchive archive,
         createModuleBda(archive, ejbs, context, contextId);
     }
 
+    private DeploymentImpl(InjectionManager injectionManager) {
+        this.injectionManager = injectionManager;
+    }
+
+    DeploymentImpl filter(RootBeanDeploymentArchive rootBDA) {
+        DeploymentImpl filteredDeployment = new DeploymentImpl(injectionManager);
+
+        List<String> nonRooIDs = List.of(rootBDA.getId(), rootBDA.getModuleBda().getId());
+
+        filteredDeployment.rarRootBdas = filterBDAs(rarRootBdas, nonRooIDs);
+        filteredDeployment.ejbRootBdas = filterBDAs(ejbRootBdas, nonRooIDs);
+        filteredDeployment.warRootBdas = filterBDAs(warRootBdas, nonRooIDs);
+        filteredDeployment.libJarRootBdas = filterBDAs(libJarRootBdas, nonRooIDs);
+        filteredDeployment.beanDeploymentArchives = filterBDAs(beanDeploymentArchives, nonRooIDs);
+        filteredDeployment.extensions = extensions;
+        filteredDeployment.dynamicExtensions = dynamicExtensions;
+        filteredDeployment.deployedEjbs = deployedEjbs;
+        filteredDeployment.archiveFactory = archiveFactory;
+        filteredDeployment.context = rootBDA.context;
+        filteredDeployment.appName = appName;
+        filteredDeployment.contextId = rootBDA.getId() + ".bda";
+        filteredDeployment.earContextAppLibBdasProcessed = earContextAppLibBdasProcessed;
+        filteredDeployment.idToBeanDeploymentArchive = idToBeanDeploymentArchive;
+        filteredDeployment.simpleServiceRegistry = simpleServiceRegistry;
+
+        return filteredDeployment;
+    }
+
+    List<RootBeanDeploymentArchive> getRootBDAs() {
+        if (warRootBdas != null) {
+            return warRootBdas;
+        } else if (ejbRootBdas != null) {
+            return ejbRootBdas;
+        } else if (rarRootBdas != null) {
+            return rarRootBdas;
+        } else if (libJarRootBdas != null) {
+            return libJarRootBdas;
+        } else {
+            return Collections.emptyList();
+        }
+    }
+
+    private <TT extends BeanDeploymentArchive> List<TT> filterBDAs(List<TT> bdas, List<String> bda) {
+        if (bdas == null) {
+            return null;
+        }
+        return bdas.stream()
+                .filter(b -> bda.stream().anyMatch(b.getId()::startsWith))
+                .collect(toList());
+    }
+
     private void addBeanDeploymentArchives(RootBeanDeploymentArchive bda) {
+        rootBDAs(bda).add(bda);
+    }
+
+    private List<RootBeanDeploymentArchive> rootBDAs(RootBeanDeploymentArchive bda) {
         BDAType moduleBDAType = bda.getModuleBDAType();
         if (moduleBDAType.equals(BDAType.WAR)) {
             if (warRootBdas == null) {
                 warRootBdas = new ArrayList<>();
             }
-            warRootBdas.add(bda);
+            return warRootBdas;
         } else if (moduleBDAType.equals(BDAType.JAR)) {
             if (ejbRootBdas == null) {
                 ejbRootBdas = new ArrayList<>();
             }
-            ejbRootBdas.add(bda);
+            return ejbRootBdas;
         } else if (moduleBDAType.equals(BDAType.RAR)) {
             if (rarRootBdas == null) {
                 rarRootBdas = new ArrayList<>();
             }
-            rarRootBdas.add(bda);
+            return rarRootBdas;
         }
+        throw new IllegalArgumentException("Unknown BDAType: " + moduleBDAType);
     }
 
     /**
@@ -765,9 +821,9 @@ public BeanDeploymentArchive getBeanDeploymentArchive(Class<?> beanClass) {
             return null;
         }
 
-        for ( BeanDeploymentArchive oneBda : beanDeploymentArchives ) {
+        for (BeanDeploymentArchive oneBda : beanDeploymentArchives) {
             BeanDeploymentArchiveImpl beanDeploymentArchiveImpl = (BeanDeploymentArchiveImpl) oneBda;
-            if ( beanDeploymentArchiveImpl.getKnownClasses().contains(beanClass.getName()) ) {
+            if (beanDeploymentArchiveImpl.getKnownClasses().contains(beanClass.getName())) {
                 return oneBda;
             }
         }

appserver/web/weld-integration/src/main/java/org/glassfish/weld/GlassFishWeldProvider.java

@@ -37,9 +37,15 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
+// Portions Copyright [2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.weld;
 
+import com.sun.enterprise.deployment.BundleDescriptor;
+import com.sun.enterprise.deployment.EjbDescriptor;
+import com.sun.enterprise.deployment.WebBundleDescriptor;
+import org.glassfish.api.invocation.InvocationManager;
+import org.glassfish.internal.api.Globals;
 import org.jboss.weld.Container;
 import org.jboss.weld.SimpleCDI;
 import org.jboss.weld.bootstrap.spi.BeanDeploymentArchive;
@@ -54,7 +60,16 @@
  * @author <a href="mailto:j.j.snyder@oracle.com">JJ Snyder</a>
  */
 public class GlassFishWeldProvider implements CDIProvider {
+    private static final WeldDeployer weldDeployer = Globals.get(WeldDeployer.class);
+    private static final InvocationManager invocationManager = Globals.get(InvocationManager.class);
+
     private static class GlassFishEnhancedWeld extends SimpleCDI {
+        GlassFishEnhancedWeld() {
+        }
+
+        GlassFishEnhancedWeld(String contextId) {
+            super(contextId == null ? Container.instance() : Container.instance(contextId));
+        }
 
         @Override
         protected BeanManagerImpl unsatisfiedBeanManager(String callerClassName) {
@@ -92,15 +107,30 @@ protected BeanManagerImpl unsatisfiedBeanManager(String callerClassName) {
 
     @Override
     public CDI<Object> getCDI() {
-      try {
-        return new GlassFishEnhancedWeld();
-      } catch ( Throwable throwable ) {
-        Throwable cause = throwable.getCause();
-        if ( cause instanceof IllegalStateException ) {
-          return null;
+        try {
+            BundleDescriptor bundle = null;
+            Object componentEnv = invocationManager.getCurrentInvocation().getJNDIEnvironment();
+            if( componentEnv instanceof EjbDescriptor) {
+                bundle = (BundleDescriptor)
+                        ((EjbDescriptor) componentEnv).getEjbBundleDescriptor().
+                                getModuleDescriptor().getDescriptor();
+
+            } else if( componentEnv instanceof WebBundleDescriptor) {
+                bundle = (BundleDescriptor) componentEnv;
+            }
+
+            BeanDeploymentArchive bda = weldDeployer.getBeanDeploymentArchiveForBundle(bundle);
+            if (bda == null) {
+                return new GlassFishEnhancedWeld();
+            } else {
+                return new GlassFishEnhancedWeld(weldDeployer.getContextIdForArchive(bda));
+            }
+        } catch ( Throwable throwable ) {
+            Throwable cause = throwable.getCause();
+            if ( cause instanceof IllegalStateException ) {
+                return null;
+            }
+            throw throwable;
         }
-        throw throwable;
-      }
     }
-
 }

appserver/web/weld-integration/src/main/java/org/glassfish/weld/ValidationNamingProxy.java

@@ -37,6 +37,7 @@
  * only if the new code is made subject to such option by the copyright
  * holder.
  */
+// Portions Copyright [2024] [Payara Foundation and/or its affiliates]
 
 package org.glassfish.weld;
 
@@ -48,7 +49,6 @@
 import org.glassfish.api.invocation.ComponentInvocation;
 import org.glassfish.api.invocation.InvocationManager;
 import org.glassfish.api.naming.NamedNamingObjectProxy;
-import org.glassfish.api.naming.NamespacePrefixes;
 import org.glassfish.hk2.api.ServiceLocator;
 import org.jboss.weld.bootstrap.WeldBootstrap;
 import org.jboss.weld.bootstrap.spi.BeanDeploymentArchive;
@@ -59,9 +59,7 @@
 import jakarta.inject.Inject;
 import jakarta.inject.Named;
 import javax.naming.NamingException;
-import jakarta.validation.Validation;
 import jakarta.validation.Validator;
-import jakarta.validation.ValidatorContext;
 import jakarta.validation.ValidatorFactory;
 import java.util.Set;
 
@@ -189,7 +187,7 @@ private synchronized BeanManager obtainBeanManager() throws NamingException {
                 if( bundle != null ) {
                     BeanDeploymentArchive bda = weldDeployer.getBeanDeploymentArchiveForBundle(bundle);
                     if( bda != null ) {
-                        WeldBootstrap bootstrap = weldDeployer.getBootstrapForApp(bundle.getApplication());
+                        WeldBootstrap bootstrap = weldDeployer.getBootstrapForArchive(bda);
 
                         beanManager = bootstrap.getManager(bda);
                     }