Getting ready for CRAN.

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: PhylogeneticEM
 Title: Automatic Shift Detection using a Phylogenetic EM
-Version: 1.4.0.9000
+Version: 1.5.0
 Authors@R: c(
     person("Paul", "Bastide", email = "paul.bastide@m4x.org", role = c("aut", "cre")),
     person("Mahendra", "Mariadassou", role = "ctb"))

NEWS.md

@@ -1,4 +1,4 @@
-# PhylogeneticEM 1.4.0.9000
+# PhylogeneticEM 1.5.0
 * Bug fix:
   * `merge_rotations` now accepts datasets with entire species missing,
   and throws an error when the missing data pattern is not compatible with a rotation.

cran-comments.md

@@ -1,13 +1,21 @@
 ## Test environments
-* macOS 10.14 (local), R 3.6.2
-* ubuntu 16.04 (on travis-ci), devel and release
-* win-builder, devel and release
+* local: macOS 10.14, R 4.0.3
+* GitHub Actions:
+  * macOS-latest: release
+  * windows-latest: release
+  * ubuntu-latest: devel, release and oldrel
+* win-builder: devel and release
 
 ## R CMD check results
-There were no ERRORs, WARNINGs or NOTEs.
+There were no ERRORs or WARNINGs.
+There was one NOTE:
+```
+checking installed package size ... NOTE
+  installed size is 5.0Mb
+  sub-directories of 1Mb or more:
+    libs 3.5Mb
+```
+This package uses `Rcpp` and `RcppArmadillo`.
 
 ## Downstream dependencies
-There are currently no downstream dependencies for this package.
-
-## Comments
-Fixed warning "Documented arguments not in \usage" in the r-devel checks.
+There are currently no downstream dependencies for this package.

inst/CITATION

@@ -13,7 +13,7 @@ citEntry(entry  = "Article",
     issn        = "1467-9868",
     pages       = "1067--1093",
     doi         = "10.1111/rssb.12206",
-    url         = "http://onlinelibrary.wiley.com/doi/10.1111/rssb.12206/full",
+    url         = "https://doi.org/10.1111/rssb.12206",
 
     textVersion =
   paste("Paul Bastide, Mahendra Mariadassou & Stephane Robin (2017).",