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#241 rep script
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@pbiecek
pbiecek committed Feb 12, 2016
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4 changes: 2 additions & 2 deletions scripts/replicationScript.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -232,13 +232,13 @@ digest::digest(model)
Removal of an object from repository

```{r}
rmFromLocalRepo("92ada1e052d4d963e5787bfc9c4b506c", repoDir = repo)
rmFromLocalRepo("600bda83cb840947976bd1ce3a11879d", repoDir = repo)
```

Remove all older than 30 days

```{r}
obj2rm <- searchInLocalRepo(list(dateFrom = "2010-01-01", dateTo = Sys.Date()-30), repoDir = repo)
obj2rm <- searchInLocalRepo(list(dateFrom = "2010-01-01", dateTo = Sys.Date()), repoDir = repo)
rmFromLocalRepo(obj2rm, repoDir = repo, many = TRUE)
```
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84 changes: 40 additions & 44 deletions scripts/replicationScript.html
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Expand Up @@ -170,20 +170,20 @@ <h1>Section 2.3</h1>
summary() -&gt; tmp

ahistory(tmp)</code></pre>
<pre><code>## iris [ff575c261c949d073b2895b05d1097c3]
<pre><code>## env[[nm]] [ff575c261c949d073b2895b05d1097c3]
## -&gt; filter(Sepal.Length &lt; 6) [d3696e13d15223c7d0bbccb33cc20a11]
## -&gt; lm(Petal.Length ~ Species, data = .) [990861c7c27812ee959f10e5f76fe2c3]
## -&gt; summary() [050e41ec3bc40b3004bc6bdd356acae7]</code></pre>
<pre class="r"><code>ahistory(md5hash = &quot;050e41ec3bc40b3004bc6bdd356acae7&quot;)</code></pre>
<pre><code>## iris [ff575c261c949d073b2895b05d1097c3]
<pre><code>## env[[nm]] [ff575c261c949d073b2895b05d1097c3]
## -&gt; filter(Sepal.Length &lt; 6) [d3696e13d15223c7d0bbccb33cc20a11]
## -&gt; lm(Petal.Length ~ Species, data = .) [990861c7c27812ee959f10e5f76fe2c3]
## -&gt; summary() [050e41ec3bc40b3004bc6bdd356acae7]</code></pre>
<p>Session info</p>
<pre class="r"><code>sinfo &lt;- asession(&quot;050e41ec3bc40b3004bc6bdd356acae7&quot;)
head(sinfo$packages)</code></pre>
<pre><code>## package * version date source
## archivist * 2.0 2016-02-10 CRAN (R 3.2.2)
## archivist * 2.0 2016-02-12 CRAN (R 3.2.2)
## assertthat 0.1 2013-12-06 CRAN (R 3.1.0)
## bitops 1.0-6 2013-08-17 CRAN (R 3.1.0)
## colorspace 1.2-6 2015-03-11 CRAN (R 3.1.3)
Expand Down Expand Up @@ -262,6 +262,9 @@ <h1>Section 3.2</h1>
repo &lt;- &quot;arepo&quot;
pl &lt;- qplot(Sepal.Length, Petal.Length, data = iris)
saveToRepo(pl, repoDir = repo)</code></pre>
<pre><code>## Warning in extractData.ggplot(artifact, parrentMd5hash = md5hash,
## parentDir = repoDir, : This artifact's data was already archived. Another
## archivisation executed with success.</code></pre>
<pre><code>## [1] &quot;11127cc6ce69a89d11d0e30865a33c13&quot;
## attr(,&quot;data&quot;)
## [1] &quot;ff575c261c949d073b2895b05d1097c3&quot;</code></pre>
Expand All @@ -284,7 +287,7 @@ <h1>Section 3.2</h1>
## 15 ff575c261c949d073b2895b05d1097c3
## 16 ff575c261c949d073b2895b05d1097c3
## 17 ff575c261c949d073b2895b05d1097c3
## 18 d3532b2dc2b3914324c493dee0665a3f
## 18 030d7e729e9f7067e3143c7cfae3168c
## 19 ff575c261c949d073b2895b05d1097c3
## 20 ff575c261c949d073b2895b05d1097c3
## 21 11127cc6ce69a89d11d0e30865a33c13
Expand All @@ -294,14 +297,12 @@ <h1>Section 3.2</h1>
## 25 11127cc6ce69a89d11d0e30865a33c13
## 26 11127cc6ce69a89d11d0e30865a33c13
## 27 11127cc6ce69a89d11d0e30865a33c13
## 28 5675c2785c34bf8cec026a580f6b6abd
## 28 48633c2812b94077935faf4cf3ddc8b2
## 29 11127cc6ce69a89d11d0e30865a33c13
## 30 ff575c261c949d073b2895b05d1097c3
## 31 5675c2785c34bf8cec026a580f6b6abd
## 31 ff575c261c949d073b2895b05d1097c3
## 32 ff575c261c949d073b2895b05d1097c3
## 33 ff575c261c949d073b2895b05d1097c3
## 34 ff575c261c949d073b2895b05d1097c3
## 35 11127cc6ce69a89d11d0e30865a33c13
## 33 11127cc6ce69a89d11d0e30865a33c13
## tag createdDate
## 1 format:rda 2016-02-09 14:37:06
## 2 class:gg 2016-02-09 14:37:06
Expand All @@ -311,33 +312,31 @@ <h1>Section 3.2</h1>
## 6 date:2016-02-09 14:37:06 2016-02-09 14:37:06
## 7 session_info:3b8c605199b8e36c8b06a193dd45c624 2016-02-09 14:37:06
## 8 format:png 2016-02-09 14:37:06
## 9 format:rda 2016-02-10 17:01:44
## 10 name:iris 2016-02-10 17:01:44
## 11 class:data.frame 2016-02-10 17:01:44
## 12 varname:Sepal.Length 2016-02-10 17:01:44
## 13 varname:Sepal.Width 2016-02-10 17:01:44
## 14 varname:Petal.Length 2016-02-10 17:01:44
## 15 varname:Petal.Width 2016-02-10 17:01:44
## 16 varname:Species 2016-02-10 17:01:44
## 17 date:2016-02-10 17:01:44 2016-02-10 17:01:44
## 18 format:rda 2016-02-10 17:01:44
## 19 session_info:d3532b2dc2b3914324c493dee0665a3f 2016-02-10 17:01:44
## 20 format:txt 2016-02-10 17:01:44
## 21 format:rda 2016-02-10 17:01:44
## 22 name:pl 2016-02-10 17:01:44
## 23 class:gg 2016-02-10 17:01:44
## 24 class:ggplot 2016-02-10 17:01:44
## 25 labelx:Sepal.Length 2016-02-10 17:01:44
## 26 labely:Petal.Length 2016-02-10 17:01:44
## 27 date:2016-02-10 17:01:44 2016-02-10 17:01:44
## 28 format:rda 2016-02-10 17:01:44
## 29 session_info:5675c2785c34bf8cec026a580f6b6abd 2016-02-10 17:01:44
## 30 format:rda 2016-02-10 17:01:44
## 31 format:rda 2016-02-10 17:01:44
## 32 session_info:5675c2785c34bf8cec026a580f6b6abd 2016-02-10 17:01:44
## 33 format:txt 2016-02-10 17:01:44
## 34 relationWith:11127cc6ce69a89d11d0e30865a33c13 2016-02-10 17:01:44
## 35 format:png 2016-02-10 17:01:45</code></pre>
## 9 format:rda 2016-02-12 19:21:53
## 10 name:iris 2016-02-12 19:21:53
## 11 class:data.frame 2016-02-12 19:21:53
## 12 varname:Sepal.Length 2016-02-12 19:21:53
## 13 varname:Sepal.Width 2016-02-12 19:21:53
## 14 varname:Petal.Length 2016-02-12 19:21:53
## 15 varname:Petal.Width 2016-02-12 19:21:53
## 16 varname:Species 2016-02-12 19:21:53
## 17 date:2016-02-12 19:21:53 2016-02-12 19:21:53
## 18 format:rda 2016-02-12 19:21:53
## 19 session_info:030d7e729e9f7067e3143c7cfae3168c 2016-02-12 19:21:53
## 20 format:txt 2016-02-12 19:21:53
## 21 format:rda 2016-02-12 19:21:54
## 22 name:pl 2016-02-12 19:21:54
## 23 class:gg 2016-02-12 19:21:54
## 24 class:ggplot 2016-02-12 19:21:54
## 25 labelx:Sepal.Length 2016-02-12 19:21:54
## 26 labely:Petal.Length 2016-02-12 19:21:54
## 27 date:2016-02-12 19:21:54 2016-02-12 19:21:54
## 28 format:rda 2016-02-12 19:21:54
## 29 session_info:48633c2812b94077935faf4cf3ddc8b2 2016-02-12 19:21:54
## 30 format:rda 2016-02-12 19:21:54
## 31 format:txt 2016-02-12 19:21:54
## 32 relationWith:11127cc6ce69a89d11d0e30865a33c13 2016-02-12 19:21:54
## 33 format:png 2016-02-12 19:21:54</code></pre>
<pre class="r"><code># deleteLocalRepo(repo)</code></pre>
<p>Session info for this obejct.</p>
<pre class="r"><code>asession(&quot;11127cc6ce69a89d11d0e30865a33c13&quot;)</code></pre>
Expand All @@ -349,10 +348,10 @@ <h1>Section 3.2</h1>
## language (EN)
## collate en_US.UTF-8
## tz Europe/Warsaw
## date 2016-02-10</code></pre>
## date 2016-02-12</code></pre>
<pre><code>## Packages ------------------------------------------------------------------</code></pre>
<pre><code>## package * version date source
## archivist * 2.0 2016-02-10 CRAN (R 3.2.2)
## archivist * 2.0 2016-02-12 CRAN (R 3.2.2)
## assertthat 0.1 2013-12-06 CRAN (R 3.1.0)
## bitops 1.0-6 2013-08-17 CRAN (R 3.1.0)
## colorspace 1.2-6 2015-03-11 CRAN (R 3.1.3)
Expand Down Expand Up @@ -422,12 +421,9 @@ <h1>Section 3.2</h1>
digest::digest(model)</code></pre>
<pre><code>## [1] &quot;2a6e492cb6982f230e48cf46023e2e4f&quot;</code></pre>
<p>Removal of an object from repository</p>
<pre class="r"><code>rmFromLocalRepo(&quot;92ada1e052d4d963e5787bfc9c4b506c&quot;, repoDir = repo)</code></pre>
<pre><code>## Warning in rmFromLocalRepo(&quot;92ada1e052d4d963e5787bfc9c4b506c&quot;, repoDir = repo): Given md5hash is not in the Repository.
## If you used artifact's md5hash that was recently deleted from repository then it's data or miniatures were removed.
## Otherwise you used md5hash that was not stored in the repository. Try again with different md5hash.</code></pre>
<pre class="r"><code>rmFromLocalRepo(&quot;600bda83cb840947976bd1ce3a11879d&quot;, repoDir = repo)</code></pre>
<p>Remove all older than 30 days</p>
<pre class="r"><code>obj2rm &lt;- searchInLocalRepo(list(dateFrom = &quot;2010-01-01&quot;, dateTo = Sys.Date()-30), repoDir = repo)
<pre class="r"><code>obj2rm &lt;- searchInLocalRepo(list(dateFrom = &quot;2010-01-01&quot;, dateTo = Sys.Date()), repoDir = repo)

rmFromLocalRepo(obj2rm, repoDir = repo, many = TRUE)</code></pre>
<p>Search for an artifact Search in a local/GitHub repository</p>
Expand All @@ -440,7 +436,7 @@ <h1>Section 3.2</h1>
<pre><code>## [1] &quot;600bda83cb840947976bd1ce3a11879d&quot; &quot;d9313a0de3e2980201a8971e3384ff26&quot;
## [3] &quot;ff575c261c949d073b2895b05d1097c3&quot; &quot;2a6e492cb6982f230e48cf46023e2e4f&quot;
## [5] &quot;93ecfdf1436932e2860c6dbdf2abc2ad&quot; &quot;afb2550d0f886f0cf3b050f04c5cd4f8&quot;</code></pre>
<pre class="r"><code>multiSearchInLocalRepo(pattern=c(&quot;class:gg&quot;, &quot;labelx:Sepal.Length&quot;),
<pre class="r"><code>searchInLocalRepo(pattern=c(&quot;class:gg&quot;, &quot;labelx:Sepal.Length&quot;),
repoDir = system.file(&quot;graphGallery&quot;, package = &quot;archivist&quot;)) </code></pre>
<pre><code>## [1] &quot;600bda83cb840947976bd1ce3a11879d&quot; &quot;70f4f83dbfef2a8afb2f495208d0a60f&quot;</code></pre>
<p>Interactive search</p>
Expand Down

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