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WGS Fast memory data-frame based annotations #564

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Sep 28, 2024
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2 changes: 1 addition & 1 deletion src/main/java/org/snpeff/SnpEff.java
Original file line number Diff line number Diff line change
Expand Up @@ -94,7 +94,7 @@ public enum OutputFormat {

// Version info
public static final String SOFTWARE_NAME = "SnpEff";
public static final String REVISION = "d";
public static final String REVISION = "e";
public static final String BUILD = Gpr.compileTimeStamp(SnpEff.class);
public static final String BUILD_DATE = Gpr.compileDate(SnpEff.class);
public static final String VERSION_MAJOR = "5.2";
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5 changes: 5 additions & 0 deletions src/main/java/org/snpeff/vcf/VcfHeaderInfo.java
Original file line number Diff line number Diff line change
Expand Up @@ -153,6 +153,11 @@ public int getNumber() {
return number;
}

public String getNumberString() {
if(number > 0) return Integer.toString(number);
return vcfInfoNumber.toString();
}

public VcfInfoNumber getVcfInfoNumber() {
return vcfInfoNumber;
}
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4 changes: 2 additions & 2 deletions test_04_TestCasesEff.csv
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@

Name , Value
Genome , testHg3770Chr22
Date , 2024-09-22 16:14
SnpEff_version , SnpEff 5.2c (build 2024-09-21 11:42), by Pablo Cingolani
Date , 2024-09-28 06:44
SnpEff_version , SnpEff 5.2d (build 2024-09-28 06:37), by Pablo Cingolani
Command_line_arguments , SnpEff -csvStats test_04_TestCasesEff.csv testHg3770Chr22 tests/integration/eff/eff_sort.vcf
Warnings , 1096
Number_of_lines_in_input_file, 1205
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