Update memo structure for TX PVLS #580
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JordanBalesBAO
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Dec 16, 2022
jason-p-pickering
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Jan 20, 2023
* HOT FIX Update memo structure for TX PVLS (#580) * Update memo structure for TX PVLS * Fix memo structure * Fix partners table * Fix partners table * Fix failing tests * Linting * updated description and news file for quick release Co-authored-by: Jordan <Jordan> * Standardize d Co-authored-by: Jason Pickering <jason.p.pickering@gmail.com>
jacksonsj
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Jan 24, 2023
* DP-793 Update Cascade Workflow Begin work to reshuffle COP23 Cascade tab to resemble COP21 template * DP-788 Template with Year 2 Target tab * DP-788 Alpha Pack template work * DP-788 Alpha pack, getting ride of external file link * DP-788 delete external formula reference * DP-788 - HTS tab HTS Modality consolidaiton - move PrEP tab after KP tab - Move TX_NEW on Cascade tab * DP-788 HTS tab: - modalities collapse - HTS_Recent move Year 2 target tab * DP-788 Year 2 Targets Tabs * DP-788 PrEP_CT HTS change * DP-793 Cascade flow work * Create COP23_Data_Pack_Template_YR2 Targets_sjj.xlsx Updates to Cascade Workflow (DP-793) Updates to color scheme on Cascade tab (DP-806) * Complete DP-806 * Updates to PMTCT, TB, VMMC, EID, HTS * Minor formula typos on Cascade tab * DP-788 CXCA Calcualtion changes HTS tab Cascade tab expected achievement * DP-788 FY Updates Color to Targets * DP-788 FY Updated across all tabs * DP-788 Color added to all Target cells * DP-788 PrEP_CT to HTS tab HTS tab formulas, and hyperlinks * DP-793 FY24 ART Coverage rate * DP-788 OVC Tab updates Hyperlink fixes * DP-788 Target Indicators color * DP-788 VMMC POS and NEG * DP-788 Template version as of Nov 9 HTS tab * DP-788 * DP-793 Cascade tab move expected acheivement, add metadata * DP-788 HTS tab changes for VMMC and PrEP HTS_TST Target column color change PrEP NEW and CT formula change * DP-788 KP Validation age bands * DP-788 KP Validation and AGYW * DP-788 * DP-788 TB_PREV (D) * Updates to Home, Spectrum, Prioritization Tabs - Home: Rename to TST - Spectrum: Update colors. Update ID fx to ref "CY2022Q4" instead of 2021. - Prioritization: Remove SNU1 col. Update FYs. * Clean up old COP23 template files * Updates on Cascade, EID, PMTCT, TB, VMMC Cascade: - Update label of TX_CURR Expected Achievement (FY23) - Update TX_NET_NEW (FY23) to use Expected Achievement instead of FY23 target for TX_CURR. - Clarify labels for Host Country Cascade - Make all Host Country Cascade editable (even percentages & FY24 PLHIV) - Note target columns in row 2 instead of with colors (ADA happier) - Fix formula references to EID tab. - Update calendar year references in Host Country Cascade INDEX formulas EID - Update labels PMTCT - Update CY references in Spectrum formulas - Updated formula for PMTCT_STAT (D) (FY24) to pull only from PEPFAR data instead of take min of PEPFAR, Host Country (less opaque to understand) - Update labels. TB: - Update labels - Update CY references in Spectrum formulas VMMC: - Update CY references in Spectrum formulas. - Update labels. * Update COP23_Data_Pack_Template.xlsx Updates to formulas, labels, etc. on all tabs to align * First steps to create COP23 Data Pack schema * Create update_cop23_datapack_schema.R * DP-788 AGYW tab reference columns * DP-788 TX_TB_PREV target indicator color Year 2 target formula * DP-788 all DSD and TA reviewed and updated for FY24 and FY23 * DP-788 HTS_Index and other row 10 updates and review * DP-788: Validation of all rows 1-3, 5-14 * Cleanup/archive in inst/extdata * Data Pack Template: Update/confirm all row 5-15 * Update update_cached_map_datapack_cogs.R * Update getCurrentCOPYear * Archive COP23 categoryOptionGroups & COGS * Create COP 2023 categoryOptionGroups.json * Update packageSetup for COP23 * Accommodate COP23 tool name change to "Target Setting Tool" * Reorganize/Clean up data-raw * Create method for caching data pack groupings * Create cop23_data_pack_schema.rda * Create cop_datapack_countries.rda * Update datapack_cogs.rda * COP23 DP Template: Change tab colors to no color * DP-832 * Update tests * Update conditional formatting. Add PrEP_CT testing dataElements & CO * Update cop23_data_pack_schema with new PrEP_CT testing DEs & COs * Documentation not updated from dev * Add new dataSet IDs just created * Update vali_OrgUnits to reflect temporary test change in PSNU level for Malawi & Zim * Update list of countries for Beta Pack generation * Hide ID col on all tabs * Delete copy file * Make sure DSNUs only print to AGYW tab * DP-809 in exportPackr/packTool * Fix DP-836 * Fix issues with file naming * Fix some failing tests * Update COP23_Data_Pack_Template.xlsx - Add Prioritization formula to each tab - Confirm/Add all subtotal functions * Update COP23_Data_Pack_Template.xlsx - More formatting (bold, conditional formatting) * Update COP23_Data_Pack_Template.xlsx Finalized conditional formatting across all tabs except TX_TB_PREV & OVC * Update COP23_Data_Pack_Template.xlsx Fixes/confirmation on numeric & percentage formats * Update COP23_Data_Pack_Template.xlsx Finalize TX_TB_PREV tab Revise Year 2 tab * Fix some test failures * Update COP23_Data_Pack_Template.xlsx - Year 2 tab overhaul * Additional updates to Year 2 tab - dataElements - Formula changes to hide if 0 * HOT FIX Update memo structure for TX PVLS (#580) * Update memo structure for TX PVLS * Fix memo structure * Fix partners table * Fix partners table * Fix failing tests * Linting * updated description and news file for quick release Co-authored-by: Jordan <Jordan> * Add Y2 ages for all indicators. Split TX_TB, TB_PREV, & OVC into column disaggs * Add DATIM metadata for OVC, TX_TB, TB_PREV to Y2 tab * Update COP23_Data_Pack_Template.xlsx - Make # PrEP tests editable - Change host country to partner country in labels - Corrected formulas in Cascade for P.C. # on ART, & P.C. # VLS - Add PLHIV_Attend.T_1 & Untreated_PLHIV_Attend.T_1 * Update COP23_Data_Pack_Template.xlsx Update formulas to pull from Spectrum for PLHIV_Attend.T_1, Untreated_PLHIV_Attend.T_1, PLHIV.T, NEW_INFECTIONS_SUBNAT.T2, & PLHIV.T2 * Update COP23_Data_Pack_Template.xlsx - Add KP ART Coverage to KP tab - Add PMTCT_ART to Year 2 tab - Add TB_ART to Year 2 tab - Add OVC_HIVSTAT to Year 2 tab * Update COP23_Data_Pack_Template.xlsx - Correct suffixes for OVC_HIVSTAT from T to T2 * Update cop23_data_pack_schema.rda Based on latest template changes * Update update_cop23_datapack_schema.R * Update test scripts * Update COP23_Data_Pack_Template.xlsx - Make sure gridlines not shown on Home tab - Make sure all panes frozen correctly on each tab - Correct formula for VL_TESTING_SUBNAT.T on Cascade - Correct formulas on Year 2 tab - Adjust color coding on Year 2 tab * Update cop23_data_pack_schema.rda update to reflect latest changes to template * Update COP23_Data_Pack_Template.xlsx Adjust formulas on HTS for PMTCT & VMMC to not show if Male, or Female, respectively. * Update cop23_data_pack_schema.rda * Update styleGuide with new Home Tab colors * Ready packing scripts for COP23 * Move createDataPack to own file * Add unpack parameter to unPackSheets * Dp 719: Generate COP23 test data (#579) * Update HTS modalities for COP23 * Add script for generation of COP23 test data * Remove unneeded file * Update mock data script for COP23 * feat: Introduce function for getting a valid organisation units by COP Year (#582) * (Revert) Updates to tests Update logic in packing checks * fix checkDisaggs test - fix test for checkDisaggs * fix test-packdatapack and lint - linted and fixed test-packDatapack * Revert changes to tests * Introduce getValidOrgunits based on COP Year * fix test to pass fixed packTool code to pass test * Re-enable test for defunct disaggs Co-authored-by: Fausto Lopez <flopez@baosystems.com> * Add data sets for COP23 * Fix test * Linting * Update news * Remove deprecation warnings * Remove various print statements * Add tests for generating COP23 datapacks * Add test back for COP22 prioritizations Co-authored-by: Christian Domaas <61550159+christian-domaas@users.noreply.github.com> Co-authored-by: Jason Pickering <jason.p.pickering@gmail.com> Co-authored-by: Jordan Bales <89547800+JordanBalesBAO@users.noreply.github.com> Co-authored-by: Fausto Lopez <flopez@baosystems.com>
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