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Point release for peppy #301

Merged
merged 58 commits into from
May 2, 2019
Merged

Point release for peppy #301

merged 58 commits into from
May 2, 2019

Commits on Apr 18, 2019

  1. safer messaging

    @vreuter
    vreuter committed Apr 18, 2019
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Commits on Apr 19, 2019

  1. udpate based on attmap dev

    @vreuter
    vreuter committed Apr 19, 2019
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Commits on Apr 23, 2019

  1. use more divvy

    @vreuter
    vreuter committed Apr 23, 2019
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  2. Merge branch 'master' of github.com:pepkit/peppy into dev

    @vreuter
    vreuter committed Apr 23, 2019
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  3. autodoc

    @nsheff
    nsheff committed Apr 23, 2019
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  4. split missing/empty errors to be more precise

    @nsheff
    nsheff committed Apr 23, 2019
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  5. bump reqs

    @vreuter
    vreuter committed Apr 23, 2019
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Commits on Apr 24, 2019

  1. adjust deps versions

    @vreuter
    vreuter committed Apr 24, 2019
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Commits on Apr 25, 2019

  1. whitespacing

    @vreuter
    vreuter committed Apr 25, 2019
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  2. hook for CLI optsargs precedence; improve docstring; pepkit/looper#168

    @vreuter
    vreuter committed Apr 25, 2019
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  3. export pipe args key

    @vreuter
    vreuter committed Apr 25, 2019
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Commits on Apr 26, 2019

  1. refine signature

    @vreuter
    vreuter committed Apr 26, 2019
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  2. first pass at SnakeProject; #286

    @vreuter
    vreuter committed Apr 26, 2019
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  3. export snakemake stuff

    @vreuter
    vreuter committed Apr 26, 2019
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  4. update tests for snakemake export

    @vreuter
    vreuter committed Apr 26, 2019
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  5. safe check for subannotations; readability

    @vreuter
    vreuter committed Apr 26, 2019
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  6. amid Snakemake compat; all tests back to passing on py2 and py3

    @vreuter
    vreuter committed Apr 26, 2019
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Commits on Apr 29, 2019

  1. better messaging

    @vreuter
    vreuter committed Apr 29, 2019
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  2. better messaging

    @vreuter
    vreuter committed Apr 29, 2019
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  3. avoid deprecation warning

    @vreuter
    vreuter committed Apr 29, 2019
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  4. bring in augmented logger util from looper

    @vreuter
    vreuter committed Apr 29, 2019
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  5. try updated sample construction; all tests passing

    @vreuter
    vreuter committed Apr 29, 2019
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  6. handling sample merger for both peppy and Snakemake

    @vreuter
    vreuter committed Apr 29, 2019
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  7. ensure that units are text, not numeric

    @vreuter
    vreuter committed Apr 29, 2019
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  8. Update build ignores

    @nsheff
    nsheff committed Apr 29, 2019
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  9. ensure indexing

    @vreuter
    vreuter committed Apr 29, 2019
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  10. better modularity; regard empty strings as null; improve messaging

    @vreuter
    vreuter committed Apr 29, 2019
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  11. update tests for better DataFrame comparison

    @vreuter
    vreuter committed Apr 29, 2019
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  12. Merge branch 'dev' of github.com:pepkit/peppy into sm_prj

    @vreuter
    vreuter committed Apr 29, 2019
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  13. cleanup and comment

    @vreuter
    vreuter committed Apr 29, 2019
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Commits on Apr 30, 2019

  1. ensure index type; close #297

    @vreuter
    vreuter committed Apr 30, 2019
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  2. depend on ubiquerg

    @vreuter
    vreuter committed Apr 30, 2019
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  3. test shell for snake project

    @vreuter
    vreuter committed Apr 30, 2019
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Commits on May 1, 2019

  1. moving utils

    @vreuter
    vreuter committed May 1, 2019
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  2. remove outdated error attr ref; acct for inheritance in py3

    @vreuter
    vreuter committed May 1, 2019
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Commits on May 2, 2019

  1. move to dev

    @vreuter
    vreuter committed May 2, 2019
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  2. Merge pull request #289 from vreuter/sm_prj 

    Snakemake compatibility
    @vreuter
    vreuter authored May 2, 2019
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  3. no longer track docs

    @vreuter
    vreuter committed May 2, 2019
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  4. update import path

    @vreuter
    vreuter committed May 2, 2019
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  5. safer sample selection; #298; fix docstring

    @vreuter
    vreuter committed May 2, 2019
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  6. Merge pull request #300 from vreuter/select-cli 

    safer sample selection; #298; fix docstring
    @vreuter
    vreuter authored May 2, 2019
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  7. use ubiquerg powerset

    @vreuter
    vreuter committed May 2, 2019
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  8. Update _version.py

    @nsheff
    nsheff authored May 2, 2019
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  9. Update changelog.md

    @nsheff
    nsheff authored May 2, 2019
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  10. Update README.md

    @nsheff
    nsheff authored May 2, 2019
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  11. standardize changelog

    @nsheff
    nsheff authored May 2, 2019
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  12. Update changelog.md

    @nsheff
    nsheff authored May 2, 2019
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  13. Snakemake casing

    @vreuter
    vreuter authored May 2, 2019
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  14. reignore build

    @vreuter
    vreuter committed May 2, 2019
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  15. Merge branch 'dev' of github.com:pepkit/peppy into dev

    @vreuter
    vreuter committed May 2, 2019
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  16. update changelog for 0.21 release

    @vreuter
    vreuter committed May 2, 2019
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  17. trigger rtd rebuild of peppy

    @vreuter
    vreuter committed May 2, 2019
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  18. Revert "trigger rtd rebuild of peppy" 

    This reverts commit 0732105.
    @vreuter
    vreuter committed May 2, 2019
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  19. fool RTD

    @vreuter
    vreuter committed May 2, 2019
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  20. fool RTD

    @vreuter
    vreuter committed May 2, 2019
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  21. RTD knows about deps now

    @vreuter
    vreuter committed May 2, 2019
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  22. better changelog itemization

    @vreuter
    vreuter committed May 2, 2019
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  23. probably need to maintain new reqs in docs until new peppy is on pypi

    @vreuter
    vreuter committed May 2, 2019
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