PMM-12678 Reset protobuf field nums, remove all deprecated stuff from API #10803

Job	Run time
Tests (mysql:5.6, mongo:4.4, postgres:10, perconalab/pmm-server:3-dev-latest)	11m 49s
Tests (mysql:5.7, mongo:4.4, postgres:11, perconalab/pmm-server:3-dev-latest)	11m 51s
Tests (mysql:8.0, mongo:4.4, postgres:12, perconalab/pmm-server:3-dev-latest)	12m 14s
Tests (mysql:8.0, mongo:4.4, postgres:13, perconalab/pmm-server:3-dev-latest)	11m 39s
Tests (percona:5.6, percona/percona-server-mongodb:4.4, perconalab/percona-distribution-postgresq...	7m 5s
Tests (percona:5.7, percona/percona-server-mongodb:4.4, perconalab/percona-distribution-postgresq...	12m 59s
Tests (percona:8.0, percona/percona-server-mongodb:4.4, perconalab/percona-distribution-postgresq...	12m 17s
Tests (mariadb:10.2, mongo:4.4, postgres:9.4, perconalab/pmm-server:3-dev-latest)	7m 9s
Tests (mariadb:10.3, percona/percona-server-mongodb:4.4, postgres:9.5, perconalab/pmm-server:3-de...	6m 43s
Tests (mariadb:10.4, postgres:9.6, perconalab/pmm-server:3-dev-latest)	6m 54s
	1h 40m 40s

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