pyamiimage: overview

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petermr edited this page Nov 27, 2021 · 2 revisions

`pyamiimage`

pyamiimage is a Python-based toolkit containing:

image processing tools

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-image-analysis

These take raw pixel images (PNG, JPEG, etc.) and prepare them for future analysis

panels

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-panels

Splits a compound figure into subpanels which can be analysed independently

skeletonization

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-skeletonization

Finds continuous lines in a binary diagram and reduces them to single-pixel width

network analysis

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-network-analysis

analyses the topology of the skeletonized diagram

AmiGraph

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-AmiGraph

AmiGraph contains AmiNodes and AmiEdges and coordinates and will be used for heuristics

SVG and BBox

https://github.com/petermr/pyamiimage/wiki/pyamiimage:-SVG-and-Bounding-Boxes

Transforming the AmiGraph and textboxes into semantic graphic objects