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Release v2.4.0#121

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Merged

peterk87 merged 33 commits intomasterphac-nml/biohansel:masterfrom developmentphac-nml/biohansel:developmentCopy head branch name to clipboardOct 13, 2019

+190-105

Commits

Commits on Aug 23, 2019

• fix to include metadata when installing with pip/conda

  DarianHole

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  ddef175

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• rename tb scheme

  DarianHole

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  11fdaf0

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• Merge pull request #110 from phac-nml/tb_command_change

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  Takadonet

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  9845135

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• Merge branch 'development' into include_metadata_schemes

  Takadonet

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• recommend tsv

  DarianHole

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  f1a580b

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• Merge pull request #109 from phac-nml/include_metadata_schemes

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  Takadonet

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Commits on Aug 26, 2019

• update readme

  DarianHole

  committed
  e2985f8

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• update readme with current changes

  DarianHole

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  c55924c

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• requested changes to readme added

  DarianHole

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  a7521e1

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• specify .tsv for metadata

  DarianHole

  committed
  6142e40

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• Merge pull request #111 from phac-nml/readme_update

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  DarianHole

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  ef020c2

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Commits on Sep 9, 2019

• Merge pull request #1 from phac-nml/development

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  glabbe

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  45edf24

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• Update subtyper.py

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  glabbe

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  d67b4e1

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• Clarify help statement for fasta file input

  glabbe

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  b99747f

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• Correct low coverage depth frequency warning for SE

  glabbe

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  8924204

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• Increase max kmer frequency to 10,000

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  glabbe

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  2033d34

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• Update subtyper.py

  glabbe

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  0b672ae

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• Merge pull request #114 from glabbe/development

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  peterk87

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Commits on Sep 17, 2019

• re-add Peter to list of authors in README

  peterk87

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  990f8a6

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• Merge pull request #117 from phac-nml/readme-readd-name

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  glabbe

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Commits on Sep 20, 2019

• Faster reverse complement using translation table

  peterk87

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  966c467

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• Merge pull request #118 from phac-nml/faster-revcomp

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  glabbe

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Commits on Sep 26, 2019

• Version bump v2.4.0; fix prog desc

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  peterk87

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  3405adb

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• Update setup.py

  peterk87

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  b340888

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• Update setup.py

  peterk87

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  ae769fb

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Commits on Sep 30, 2019

• Fix metadata NA value issue

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  peterk87

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  84fe631

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Commits on Oct 2, 2019

• Merge pull request #120 from phac-nml/fix/na-subtype

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  DarianHole

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  22c9a04

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• Merge branch 'development' into dev/2.4.0

  peterk87

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  34070e5

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Commits on Oct 4, 2019

• Update setup.py

  peterk87

  authored
  a2d0c83

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• Update .travis.yml

  peterk87

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• Update tox.ini

  peterk87

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Commits on Oct 8, 2019

• Merge pull request #119 from phac-nml/dev/2.4.0

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  DarianHole

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  34d3a46

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Commits on Oct 13, 2019

• fix packaging issue; update metadata table docs and usage help

  peterk87

  committed
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