Updated resfinder database to most recent version

phac-nml · May 26, 2022 · a49929b · a49929b
1 parent bf7aee4
commit a49929b
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/ci-test.yml b/.github/workflows/ci-test.yml
@@ -18,7 +18,7 @@ jobs:
     runs-on: ubuntu-latest
 
     env:
-      DATABASE_COMMITS: '--resfinder-commit 039e2cc6750a8ad377b32d814e723641316b170a --pointfinder-commit 8c694b9f336153e6d618b897b3b4930961521eb8 --plasmidfinder-commit 1a443a19a1142aa1018ef62f0bdbfd871b79eab6'
+      DATABASE_COMMITS: '--resfinder-commit fa32d9a3cf0c12ec70ca4e90c45c0d590ee810bd --pointfinder-commit 8c694b9f336153e6d618b897b3b4930961521eb8 --plasmidfinder-commit 1a443a19a1142aa1018ef62f0bdbfd871b79eab6'
 
     strategy:
       fail-fast: False

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,7 +6,7 @@
 * Drop support for Python 3.5 as it leads to issues with managing dependency versions (0.8.0.dev0).
 * Switched from disallowing to generating a warning when the PointFinder organism is not one of the validated organisms (0.8.0.dev1).
 * Updated ResFinder and PointFinder gene drug key to `072621` (0.8.0.dev2).
-* Updated default database commits to those corresponding to dates used by ResFinder (2022-02-04), PointFinder (2021-02-01), and PlasmidFinder (2021-11-29) (0.8.0.dev2).
+* Updated default database commits to those corresponding to dates used by ResFinder (2022-05-24), PointFinder (2021-02-01), and PlasmidFinder (2021-11-29) (0.8.0.dev2).
 * Fixed issue when multiple matches for same amino acid change to try and select the most specific amino acid change (0.8.0.dev2).
 * Fixed up PlasmidFinder database handling to account for changes to PlasmidFinder database structure (0.8.0.dev2).
 

diff --git a/staramr/databases/AMRDatabasesManager.py b/staramr/databases/AMRDatabasesManager.py
@@ -12,9 +12,9 @@
 
 class AMRDatabasesManager:
     # Update to commits corresponding to dates listed on <https://cge.cbs.dtu.dk/services/ResFinder/> (and PlasmidFinder)
-    # As of May 19, 2022
+    # As of May 26, 2022
     DEFAULT_COMMITS = {
-        'resfinder': '039e2cc6750a8ad377b32d814e723641316b170a', # 2022-02-04
+        'resfinder': 'fa32d9a3cf0c12ec70ca4e90c45c0d590ee810bd', # 2022-05-24
         'pointfinder': '8c694b9f336153e6d618b897b3b4930961521eb8', # 2021-02-01
         'plasmidfinder': '1a443a19a1142aa1018ef62f0bdbfd871b79eab6', # 2021-11-29
     }

diff --git a/staramr/tests/integration/databases/test_AMRDatabasesManager.py b/staramr/tests/integration/databases/test_AMRDatabasesManager.py
@@ -7,7 +7,7 @@
 
 
 class AMRDatabasesManagerIT(unittest.TestCase):
-    RESFINDER_DEFAULT_COMMIT = '039e2cc6750a8ad377b32d814e723641316b170a'
+    RESFINDER_DEFAULT_COMMIT = 'fa32d9a3cf0c12ec70ca4e90c45c0d590ee810bd'
     POINTFINDER_DEFAULT_COMMIT = '8c694b9f336153e6d618b897b3b4930961521eb8'
     PLASMIDFINDER_DEFAULT_COMMIT = '1a443a19a1142aa1018ef62f0bdbfd871b79eab6'