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Closes #2501-general-issue-make-subject-keys-flexible-in-all-functions #2516
Closes #2501-general-issue-make-subject-keys-flexible-in-all-functions #2516
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…rs argument to use get_admiral_option("subject_keys"). Came across an issue during pkgdown checklist with bds_exposure.R lines 365-366 with !!!adsl_vars
…must've pulled by mistake. Updated Functions and fixed an error when replacing UBSUBJID, STUDYID with get_admiral_options("Subject_keys)
…posure.Rmd line 365 but still get Argument `enexpr(analysis_var)` must be a <symbol>, but is missing.
…01-general-issue-make-subject-keys-flexible-in-all-functions
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I had an issue when doing pkgdown::build_site() with the bds_exposure script giving an error for line 365. Tried to update that too but its still throwing back an error. I'm pushing the changes for now while I sort out review errors.
…ct_keys"), CMREFID = FAREFID) to address symbol expression error.
…umn and formatting
My fault, I just had to update Rtools, and finding where errors in the test scripts that used the updated functions was easier. |
This Pull Request is stale because it has not been worked on in 15 days. |
Sorry, I'll get this fixed by the weekend. Work got hectic and preparing for an interview! |
…("subject_keys") for the bds_exposure vignette
I just noticed that after I run styler it misaligns the tables in the test scripts again. I can correct and we can just accept the failed styler check? |
Usually styler preserves alignment in tables if
I think when you aligned the tables you centered most of the columns. This is not considered as aligned by styler. |
…e-in-all-functions
I fixed the news here - noticed something else got messed up from another PR with the news. @bundfussr was there anything else that we needed to fix here? |
@bms63 , the news are fine now. Just the alignment of the |
@bundfussr I think I am confused by styler request. I have run styler and no changes are implemented for alignment I think styler wants to put in a space after the comma so we can't align the data to the header anyways as the studyid takes up more room now. Let me know what I am missing, but if you have the time can you just fix this how you want it as I guess I am not following. |
@bms63 , I've aligned the |
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So you want character values manually left aligned and numeric values right aligned?
Wondering if we automate this as I am never going to remember to do this?
That would be ideal for readability.
This would be really helpful but would require some work. An addin which aligns a selected |
@sadchla-codes sounds like a great candidate for https://github.com/pharmaverse/pharmaverse4devs |
Thank you for your Pull Request! We have developed this task checklist from the Development Process Guide to help with the final steps of the process. Completing the below tasks helps to ensure our reviewers can maximize their time on your code as well as making sure the admiral codebase remains robust and consistent.
Please check off each taskbox as an acknowledgment that you completed the task or check off that it is not relevant to your Pull Request. This checklist is part of the Github Action workflows and the Pull Request will not be merged into the
main
branch until you have checked off each task.styler::style_file()
to style R and Rmd filesinst/cheatsheet/admiral_cheatsheet.pptx
and re-upload a PDF and a PNG version of it to the same folder. (The PNG version can be created by taking a screenshot of the PDF version.)devtools::document()
so all.Rd
files in theman
folder and theNAMESPACE
file in the project root are updated appropriatelyNEWS.md
under the header# admiral (development version)
if the changes pertain to a user-facing function (i.e. it has an@export
tag) or documentation aimed at users (rather than developers). A Developer Notes section is available inNEWS.md
for tracking developer-facing issues.pkgdown::build_site()
and check that all affected examples are displayed correctly and that all new functions occur on the "Reference" page.lintr::lint_package()
R CMD check
locally and address all errors and warnings -devtools::check()