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47 Open 53 Closed
47 Open 53 Closed
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Issues list

SKBR3 alignment: SRR7346978
#113 opened Nov 7, 2024 by MJoseMo
circular reference genomes
#112 opened Oct 14, 2024 by meono
Questions on loading fastq.gz, and output.sam
#111 opened Jul 30, 2024 by rl4940
ngmlr stops using cpu and runs infinitely
#109 opened Mar 26, 2024 by snm32
comparing large genomes
#107 opened May 18, 2023 by mrwangyz
Length of read not equal length of quality values
#106 opened Mar 27, 2023 by lunky-zao
Maybe I find a new bug about RG option
#105 opened Aug 8, 2022 by yshcai
ONT preset values are commented out in code. Why?
#104 opened Apr 5, 2022 by TimD1
Optional SAM flags
#103 opened Jan 17, 2022 by davidvho
running long jobs
#102 opened Sep 30, 2021 by bkallow
New github release?
#101 opened Aug 21, 2021 by nileshpatra
Segmentation fault
#97 opened Jun 21, 2021 by zjwang6
2
Signed Integer Overflow in MAPQ Computation
#95 opened May 5, 2021 by paudano
1
segmentation fault using ngmlr 0.2.7
#94 opened Mar 13, 2021 by lentil824
13
New user questions
#93 opened Mar 10, 2021 by ChristopherRichie
Error in `ngmlr': double free or corruption (!prev): 0x00002aaed8eeb910
#92 opened Feb 19, 2021 by MikeWLloyd
4
[A SOLUTION TO] => samtools issue : incomplete aux field/truncated file
#89 opened Nov 22, 2020 by RemiMaglione
2
Convex Gap-cost alignment
#87 opened Oct 12, 2020 by csuzhang
NGMLR with samtools 1.10 and 1.11
#86 opened Oct 7, 2020 by marcotoffoli
5
Indel alignment
#84 opened Jul 20, 2020 by shimbalama
4
MAPQ of -2147483648 attributed to some reads in samfile (minimum value for an int32)
#83 opened Jul 19, 2020 by OmarOakheart
1
mapping quality
#79 opened Apr 21, 2020 by Wuxy96
1
Soft clipping and read splitting
#78 opened Apr 9, 2020 by shimbalama
1
Mapping to repeats leads to deletions with low allele frequency
#76 opened Feb 4, 2020 by flashton2003
6
Parse error at line
#75 opened Feb 3, 2020 by marcotoffoli
19
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