Fixed a crash during the second merge phase where a batch was empty #177
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| name: build | |
| on: [push] | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| build-ipk: | |
| name: ${{matrix.buildname}} | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-22.04, ubuntu-20.04, macos-13, macos-12 ] | |
| include: | |
| - os: ubuntu-22.04 | |
| buildname: 'ubuntu-22.04' | |
| triplet: x64-linux | |
| compiler: gcc_64 | |
| - os: ubuntu-20.04 | |
| buildname: 'ubuntu-20.04' | |
| triplet: x64-linux | |
| compiler: gcc_64 | |
| - os: macos-13 | |
| buildname: 'macos-13' | |
| triplet: x64-osx | |
| compiler: clang_64 | |
| - os: macos-12 | |
| buildname: 'macos-12' | |
| triplet: x64-osx | |
| compiler: clang_64 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v1 | |
| id: cpu-cores | |
| - name: (MacOS) Install dependencies | |
| if: runner.os == 'macOS' | |
| run: brew update && brew install cmake boost zlib && pip3 install click | |
| - name: (Linux) Install dependencies | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get update && sudo apt-get install -yq libboost-dev libboost-serialization-dev libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev zlib1g-dev | |
| - name: (MacOS) Download RAxML-ng | |
| if: runner.os == 'macOS' | |
| run: wget https://github.com/amkozlov/raxml-ng/releases/download/1.2.0/raxml-ng_v1.2.0_macos_x86_64.zip && unzip raxml-ng_v1.2.0_macos_x86_64.zip | |
| - name: (Linux) Download RAxML-ng | |
| if: runner.os == 'Linux' | |
| run: wget https://github.com/amkozlov/raxml-ng/releases/download/1.2.0/raxml-ng_v1.2.0_linux_x86_64.zip && unzip raxml-ng_v1.2.0_linux_x86_64.zip | |
| - name: Configure CMake | |
| run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
| - name: Build | |
| run: cmake --build ${{runner.workspace}}/bin --config $BUILD_TYPE -j ${{ steps.cpu-cores.outputs.count }} | |
| - name: Test build successful | |
| run: test -f ${{runner.workspace}}/bin/ipk/ipk-dna && test -f ${{runner.workspace}}/bin/ipk/ipk-aa | |
| - name: Test python script | |
| run: python3 ipk.py build --help | |
| - name: Build tools | |
| run: cmake --build ${{runner.workspace}}/bin --config $BUILD_TYPE --target diff-dna ipk-dna -j ${{ steps.cpu-cores.outputs.count }} | |
| - name: Test | |
| run: pwd && ls && echo "OK" && ls ../ && echo "OK ${{runner.workspace}}" && ls ${{runner.workspace}} | |
| - name: Test database build | |
| run: bash tests/test-db-build.sh ${{runner.workspace}}/IPK ${{runner.workspace}}/IPK/raxml-ng | |