Phys2bids is a python3 library meant to format physiological files in BIDS.
It was born for AcqKnowledge files (BIOPAC), and at the moment it supports
.acq
files as well as .txt
files obtained by labchart
(ADInstruments).
It doesn't support physiological files recorded with the MRI, as you can find a software for it here.
It requires python 3.6 or above, as well as the modules:
numpy >= 1.9.3
matplotlib >= 3.1.1
In order to process .acq
files, it needs bioread
, an excellent module
that can be found at this link.
Donwload the package as zip from github and uncompress or if you have git
use the command:
git clone https://github.com/smoia/phys2bids.git
open a terminal in the phy2bids folder and execute the command:
pip3 install .
type the command:
phys2bids -v
if your output is: phys2bids 1.2.0-beta
or similar, phys2bids is ready to be used.
The project is currently under development. Any suggestion/bug report is welcome! Feel free to open an issue.
This project follows the all-contributors specification. Contributions of any kind welcome!
Thanks goes to these wonderful people (emoji key):
Copyright 2019, The Phys2BIDS community.
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.