Update CRISPRessoPooledCORE.py (#502)

resolve error TypeError: ufunc 'add' did not contain a loop with signature matching types (dtype('int64'))... Presumably this error arises when df_all_demux['chr_id'] is an int.
pinellolab · Nov 21, 2024 · ecac07a · ecac07a
1 parent 94db5fc
commit ecac07a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/CRISPResso2/CRISPRessoPooledCORE.py b/CRISPResso2/CRISPRessoPooledCORE.py
@@ -1045,7 +1045,7 @@ def rreplace(s, old, new):
             if can_finish_incomplete_run and 'genome_demultiplexing' in crispresso2_info['running_info']['finished_steps'] and os.path.isfile(REPORT_ALL_DEPTH):
                 info('Using previously-computed demultiplexing of genomic reads')
                 df_all_demux = pd.read_csv(REPORT_ALL_DEPTH, sep='\t')
-                df_all_demux['loc'] = df_all_demux['chr_id']+' ' + df_all_demux['start'].apply(str) + ' '+df_all_demux['end'].apply(str)
+                df_all_demux['loc'] = df_all_demux['chr_id'].apply(str) + ' ' + df_all_demux['start'].apply(str) + ' '+df_all_demux['end'].apply(str)
                 df_all_demux.set_index(['loc'], inplace=True)
             else:
                 #REDISCOVER LOCATIONS and DEMULTIPLEX READS