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pinellolab · Jun 19, 2024 · 8b97448 · 8b97448
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commit 8b97448
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -23,7 +23,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v3
       with:
-        python-version: '==3.12.3'
+        python-version: '3.x'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

diff --git a/requirements.txt b/requirements.txt
@@ -1,5 +1,5 @@
 Cython==3.0.10
-numpy<2
+numpy==2.0.0
 pandas
 scipy
 perturb-tools>=0.2.5

diff --git a/setup.py b/setup.py
@@ -18,7 +18,7 @@
     url="https://github.com/pinellolab/crispr-bean",
     packages=find_namespace_packages(),
     ext_modules=cythonize(
-        ["bean/mapping/CRISPResso2Align.pyx"]}
+        ["bean/mapping/CRISPResso2Align.pyx"], compiler_directives={"language_level": 2}
     ),
     include_dirs=np.get_include(),
     setup_requires=[