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pirovc authored Sep 24, 2019
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wget https://raw.githubusercontent.com/pirovc/genome_updater/master/genome_updater.sh

- genome_updater depends mainly on the GNU Core Utilities and some additional tools (parallel, wget, awk, sed, ...) which are commonly available in most distributions
- genome_updater depends mainly on the GNU Core Utilities and some additional tools (`parallel`, `wget`, `awk`, `sed`, ...) which are commonly available in most distributions
- To test genome_updater basic functions, run the script `tests/tests.sh`. It should print "All tests finished successfully" at the end.
- Make sure you have access to the NCBI ftp folders: ftp://ftp.ncbi.nlm.nih.gov/genomes/ and ftp://ftp.ncbi.nih.gov/pub/taxonomy/
- Make sure you have access to the NCBI ftp folders: `ftp://ftp.ncbi.nlm.nih.gov/genomes/` and `ftp://ftp.ncbi.nih.gov/pub/taxonomy/`

## Simple example:

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