python polars 0.14.11 #4848
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python polars 0.14.11 #4848
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Any idea how we can fix this @messense? I think the changes we did since latest release was using |
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The problem is that 1021f23 introduced |
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You can try my [patch.crates-io]
cmake = { git = "https://github.com/messense/cmake-rs.git", branch = "cross-compile" }Or you can add some CMake toolchain files for these cross compiling targets, then set |
Right, thanks for the help as always! 🙌 I will patch to your branch and keep an eye out for the issue upstream. |
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🤦♂️ I was messing around with a potential default cmake toolchain file in |
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Should I point to another branch? |
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I'm afraid GCC 4.8.5 might not be able to build zlib-ng. |
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Alright.. I think we'll just ship zlib for arm then. 👍 |
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Can't we build zlib-ng with |
I'm experimenting with maturin build --target aarch64-unknown-linux-gnu --release --zigusing maturin v0.13.3, but I haven't tested the wheel on arm64 Linux yet.
Some references in case you're interested: |
Unfortunately it does not work Python 3.10.7 (main, Sep 13 2022, 16:13:35) [GCC 10.2.1 20210110] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from polars import polars
/usr/local/lib/python3.10/site-packages/polars/__init__.py:11: UserWarning: polars binary missing!
warnings.warn("polars binary missing!")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: /usr/local/lib/python3.10/site-packages/polars/polars.abi3.so: cannot allocate memory in static TLS blockError message is |
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I think it just failed to load the polars library, probably due to wrong minimum glibc version. Edit:
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root@c3b9f52db868:/io# ldd /usr/local/lib/python3.10/site-packages/polars/polars.abi3.so
libm.so.6 => /lib/aarch64-linux-gnu/libm.so.6 (0x00000055039f0000)
libpthread.so.0 => /lib/aarch64-linux-gnu/libpthread.so.0 (0x0000005503a9d000)
libc.so.6 => /lib/aarch64-linux-gnu/libc.so.6 (0x0000005503ace000)
libdl.so.2 => /lib/aarch64-linux-gnu/libdl.so.2 (0x0000005503c43000)
/lib/ld-linux-aarch64.so.1 (0x0000005500000000)
root@c3b9f52db868:/io#
root@c3b9f52db868:/io# ls /usr/lib/aarch64-linux-gnu/libgomp.so.1
/usr/lib/aarch64-linux-gnu/libgomp.so.1
root@c3b9f52db868:/io# LD_PRELOAD=/usr/lib/aarch64-linux-gnu/libgomp.so.1 python
Python 3.10.7 (main, Sep 13 2022, 16:13:35) [GCC 10.2.1 20210110] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from polars import polars
/usr/local/lib/python3.10/site-packages/polars/__init__.py:11: UserWarning: polars binary missing!
warnings.warn("polars binary missing!")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: /usr/local/lib/python3.10/site-packages/polars/polars.abi3.so: cannot allocate memory in static TLS block
>>> |
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When I try to build Polars with zig, it fails to compile zlib-ng ❯ maturin build --zig
📦 Including license file "LICENSE"
🍹 Building a mixed python/rust project
🔗 Found pyo3 bindings with abi3 support for Python ≥ 3.7
🐍 Not using a specific python interpreter
Compiling cfg-if v1.0.0
Compiling scopeguard v1.1.0
Compiling once_cell v1.14.0
Compiling either v1.8.0
Compiling static_assertions v1.1.0
Compiling futures-sink v0.3.24
Compiling ryu v1.0.11
Compiling futures-io v0.3.24
Compiling pin-project-lite v0.2.9
Compiling smallvec v1.9.0
Compiling pin-utils v0.1.0
Compiling itoa v1.0.3
Compiling alloc-no-stdlib v2.0.3
Compiling rle-decode-fast v1.0.3
Compiling siphasher v0.3.10
Compiling adler v1.0.2
Compiling fallible-streaming-iterator v0.1.9
Compiling iana-time-zone v0.1.47
Compiling array-init-cursor v0.2.0
Compiling crc-catalog v1.1.1
Compiling adler32 v1.2.0
Compiling simdutf8 v0.1.4
Compiling rawpointer v0.2.1
Compiling ppv-lite86 v0.2.16
Compiling base64 v0.13.0
Compiling hash_hasher v2.0.3
Compiling foreign_vec v0.1.0
Compiling streaming-iterator v0.1.7
Compiling dyn-clone v1.0.9
Compiling strength_reduce v0.2.3
Compiling bitflags v1.3.2
Compiling strum v0.23.0
Compiling unicode-width v0.1.9
Compiling regex-syntax v0.6.27
Compiling byteorder v1.4.3
Compiling hex v0.4.3
Compiling unindent v0.1.10
Compiling glob v0.3.0
Compiling libc v0.2.132
Compiling crossbeam-utils v0.8.11
Compiling libm v0.2.5
Compiling rayon-core v1.9.3
Compiling serde v1.0.144
Compiling memchr v2.5.0
Compiling futures-core v0.3.24
Compiling futures-channel v0.3.24
Compiling futures-task v0.3.24
Compiling parking_lot_core v0.9.3
Compiling futures-util v0.3.24
Compiling crc32fast v1.3.2
Compiling serde_json v1.0.85
Compiling log v0.4.17
Compiling lexical-util v0.8.5
Compiling snap v1.0.5
Compiling signal-hook v0.3.14
Compiling libflate_lz77 v1.1.0
Compiling alloc-stdlib v0.2.1
Compiling miniz_oxide v0.5.4
Compiling planus v0.3.1
Compiling streaming-decompression v0.1.2
Compiling crc v2.1.0
Compiling matrixmultiply v0.3.2
Compiling anyhow v1.0.64
Compiling num-traits v0.2.15
Compiling memoffset v0.6.5
Compiling crossbeam-epoch v0.9.10
Compiling num-integer v0.1.45
Compiling slab v0.4.7
Compiling indexmap v1.9.1
Compiling lock_api v0.4.8
Compiling num-bigint v0.4.3
Compiling num-iter v0.1.43
Compiling num-rational v0.4.1
Compiling uncased v0.9.7
Compiling rayon v1.5.3
Compiling ahash v0.7.6
Compiling smartstring v1.0.1
Compiling fxhash v0.2.1
Compiling brotli-decompressor v2.3.2
Compiling lexical-write-integer v0.8.5
Compiling lexical-parse-integer v0.8.6
Compiling crossbeam-channel v0.5.6
Compiling libflate v1.2.0
Compiling aho-corasick v0.7.19
Compiling csv-core v0.1.10
Compiling phf_shared v0.11.1
Compiling getrandom v0.2.7
Compiling num_cpus v1.13.1
Compiling time v0.1.44
Compiling signal-hook-registry v1.4.0
Compiling mio v0.8.4
Compiling dirs-sys v0.3.7
Compiling memmap2 v0.5.7
Compiling lexical-write-float v0.8.5
Compiling lexical-parse-float v0.8.5
Compiling crossbeam-deque v0.8.2
Compiling phf v0.11.1
Compiling rand_core v0.6.3
Compiling parking_lot v0.12.1
Compiling brotli v3.3.4
Compiling dirs v4.0.0
Compiling async-stream v0.3.3
Compiling bytemuck v1.12.1
Compiling multiversion v0.6.1
Compiling thiserror v1.0.34
Compiling inventory v0.2.3
Compiling zstd-sys v2.0.1+zstd.1.5.2
Compiling lz4-sys v1.9.4
Compiling jemalloc-sys v0.5.1+5.3.0-patched
Compiling num-complex v0.4.2
Compiling float-cmp v0.9.0
Compiling regex v1.6.0
Compiling rand_chacha v0.3.1
Compiling lexical-core v0.8.5
Compiling signal-hook-mio v0.2.3
Compiling libz-ng-sys v1.1.8
Compiling pyo3-ffi v0.16.6
Compiling chrono v0.4.22
Compiling lexical v6.1.1
Compiling rand v0.8.5
Compiling crossterm v0.23.2
Compiling pyo3 v0.16.6
Compiling ndarray v0.15.6
Compiling comfy-table v5.0.1
Compiling rand_distr v0.4.3
Compiling chrono-tz v0.6.3
Compiling futures-executor v0.3.24
Compiling arrow-format v0.7.0
Compiling bincode v1.3.3
Compiling num v0.4.0
Compiling futures v0.3.24
Compiling parquet-format-safe v0.2.4
Compiling hashbrown v0.12.3
Compiling polars-utils v0.23.0 (/home/luna.kuleuven.be/u0079808/software/polars/polars/polars-utils)
Compiling halfbrown v0.1.15
Compiling json-deserializer v0.4.0
Compiling value-trait v0.4.0
Compiling numpy v0.16.2
Compiling avro-schema v0.3.0
Compiling simd-json v0.6.0
Compiling jsonpath_lib v0.3.0 (https://github.com/ritchie46/jsonpath?branch=improve_compiled#24eaf0b4)
Compiling lz4 v1.24.0
Compiling zstd-safe v5.0.2+zstd.1.5.2
Compiling zstd v0.11.2+zstd.1.5.2
error: failed to run custom build command for `libz-ng-sys v1.1.8`
Caused by:
process didn't exit successfully: `/home/luna.kuleuven.be/u0079808/software/polars/py-polars/target/debug/build/libz-ng-sys-568e90ca8c20e909/build-script-build_zng` (exit status: 101)
--- stdout
CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
HOST_CMAKE_TOOLCHAIN_FILE = None
CMAKE_TOOLCHAIN_FILE = None
CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
HOST_CMAKE_GENERATOR = None
CMAKE_GENERATOR = None
CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
HOST_CMAKE_PREFIX_PATH = None
CMAKE_PREFIX_PATH = None
CMAKE_x86_64-unknown-linux-gnu = None
CMAKE_x86_64_unknown_linux_gnu = None
HOST_CMAKE = None
CMAKE = None
running: "cmake" "/home/luna.kuleuven.be/u0079808/.cargo/registry/src/github.com-1ecc6299db9ec823/libz-ng-sys-1.1.8/src/zlib-ng" "-DBUILD_SHARED_LIBS=OFF" "-DZLIB_COMPAT=OFF" "-DZLIB_ENABLE_TESTS=OFF" "-DWITH_GZFILEOP=ON" "-DCMAKE_INSTALL_PREFIX=/home/luna.kuleuven.be/u0079808/software/polars/py-polars/target/x86_64-unknown-linux-gnu/debug/build/libz-ng-sys-1f0805334c6c82d3/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/home/luna.kuleuven.be/u0079808/.cache/cargo-zigbuild/0.12.0/zigcc-x86_64-unknown-linux-gnu.2.17.sh" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/home/luna.kuleuven.be/u0079808/.cache/cargo-zigbuild/0.12.0/zigcxx-x86_64-unknown-linux-gnu.2.17.sh" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/home/luna.kuleuven.be/u0079808/.cache/cargo-zigbuild/0.12.0/zigcc-x86_64-unknown-linux-gnu.2.17.sh" "-DCMAKE_BUILD_TYPE=Debug"
-- Using CMake version 3.16.3
-- ZLIB_HEADER_VERSION: 1.2.11
-- ZLIBNG_HEADER_VERSION: 2.1.0.devel
-- The C compiler identification is Clang 13.0.1
-- Check for working C compiler: /home/luna.kuleuven.be/u0079808/.cache/cargo-zigbuild/0.12.0/zigcc-x86_64-unknown-linux-gnu.2.17.sh
-- Check for working C compiler: /home/luna.kuleuven.be/u0079808/.cache/cargo-zigbuild/0.12.0/zigcc-x86_64-unknown-linux-gnu.2.17.sh -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Arch detected: 'x86_64'
-- Basearch of 'x86_64' has been detected as: 'x86'
-- Performing Test FNO_LTO_AVAILABLE
-- Performing Test FNO_LTO_AVAILABLE - Success
-- Looking for sys/auxv.h
-- Looking for sys/auxv.h - found
-- Looking for sys/sdt.h
-- Looking for sys/sdt.h - not found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of off64_t
-- Check size of off64_t - done
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for strerror
-- Looking for strerror - found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Performing Test HAVE_NO_INTERPOSITION
-- Performing Test HAVE_NO_INTERPOSITION - Success
-- Performing Test HAVE_ATTRIBUTE_VISIBILITY_HIDDEN
-- Performing Test HAVE_ATTRIBUTE_VISIBILITY_HIDDEN - Success
-- Performing Test HAVE_ATTRIBUTE_VISIBILITY_INTERNAL
-- Performing Test HAVE_ATTRIBUTE_VISIBILITY_INTERNAL - Success
-- Performing Test HAVE_BUILTIN_CTZ
-- Performing Test HAVE_BUILTIN_CTZ - Success
-- Performing Test HAVE_BUILTIN_CTZLL
-- Performing Test HAVE_BUILTIN_CTZLL - Success
-- Performing Test HAVE_PTRDIFF_T
-- Performing Test HAVE_PTRDIFF_T - Success
-- Performing Test HAVE_AVX2_INTRIN
-- Performing Test HAVE_AVX2_INTRIN - Success
-- Performing Test HAVE_AVX512_INTRIN
-- Performing Test HAVE_AVX512_INTRIN - Success
-- Performing Test HAVE_MASK_INTRIN
-- Performing Test HAVE_MASK_INTRIN - Success
-- Performing Test HAVE_AVX512VNNI_INTRIN
-- Performing Test HAVE_AVX512VNNI_INTRIN - Success
-- Performing Test HAVE_SSE41_INTRIN
-- Performing Test HAVE_SSE41_INTRIN - Success
-- Performing Test HAVE_SSE42CRC_INLINE_ASM
-- Performing Test HAVE_SSE42CRC_INLINE_ASM - Success
-- Performing Test HAVE_SSE42CRC_INTRIN
-- Performing Test HAVE_SSE42CRC_INTRIN - Success
-- Performing Test HAVE_SSE42CMPSTR_INTRIN
-- Performing Test HAVE_SSE42CMPSTR_INTRIN - Success
-- Performing Test HAVE_SSE2_INTRIN
-- Performing Test HAVE_SSE2_INTRIN - Success
-- Performing Test HAVE_SSSE3_INTRIN
-- Performing Test HAVE_SSSE3_INTRIN - Success
-- Performing Test HAVE_PCLMULQDQ_INTRIN
-- Performing Test HAVE_PCLMULQDQ_INTRIN - Success
-- Performing Test HAVE_VPCLMULQDQ_INTRIN
-- Performing Test HAVE_VPCLMULQDQ_INTRIN - Failed
-- Architecture-specific source files: arch/x86/x86_features.c;arch/x86/slide_hash_avx2.c;arch/x86/chunkset_avx.c;arch/x86/compare256_avx2.c;arch/x86/adler32_avx2.c;arch/x86/adler32_avx512.c;arch/x86/adler32_avx512_vnni.c;arch/x86/chunkset_sse41.c;arch/x86/adler32_sse42.c;arch/x86/insert_string_sse42.c;arch/x86/chunkset_sse2.c;arch/x86/compare256_sse2.c;arch/x86/slide_hash_sse2.c;arch/x86/adler32_ssse3.c;arch/x86/crc32_fold_pclmulqdq.c
-- The following features have been enabled:
* CMAKE_BUILD_TYPE, Build type: Debug (selected)
* AVX2_SLIDEHASH, Support AVX2 optimized slide_hash, using "-mavx2"
* AVX_CHUNKSET, Support AVX optimized chunkset, using "-mavx2"
* AVX2_COMPARE256, Support AVX2 optimized compare256, using "-mavx2"
* AVX2_ADLER32, Support AVX2-accelerated adler32, using "-mavx2"
* AVX512_ADLER32, Support AVX512-accelerated adler32, using "-mavx512f -mavx512dq -mavx512bw -mavx512vl -mtune=cascadelake"
* AVX512VNNI_ADLER32, Support AVX512VNNI adler32, using "-mavx512f -mavx512dq -mavx512bw -mavx512vl -mavx512vnni -mtune=cascadelake"
* SSE42_CRC, Support SSE4.2 optimized CRC hash generation, using "-msse4.2"
* SSSE3_ADLER32, Support SSSE3-accelerated adler32, using "-mssse3"
* PCLMUL_CRC, Support CRC hash generation using PCLMULQDQ, using "-mssse3 -msse4.2 -mpclmul"
* WITH_GZFILEOP, Compile with support for gzFile related functions
* WITH_SANITIZER, Enable sanitizer support
* WITH_OPTIM, Build with optimisation
* WITH_NEW_STRATEGIES, Use new strategies
* WITH_AVX2, Build with AVX2
* WITH_AVX512, Build with AVX512
* WITH_AVX512VNNI, Build with AVX512 VNNI
* WITH_SSE2, Build with SSE2
* WITH_SSSE3, Build with SSSE3
* WITH_SSE41, Build with SSE41
* WITH_SSE42, Build with SSE42
* WITH_PCLMULQDQ, Build with PCLMULQDQ
-- The following features have been disabled:
* FORCE_TZCNT, Assume CPU is TZCNT capable
* ZLIB_SYMBOL_PREFIX, Publicly exported symbols DO NOT have a custom prefix
* ZLIB_COMPAT, Compile with zlib compatible API
* ZLIB_ENABLE_TESTS, Build test binaries
* ZLIB_DUAL_LINK, Dual link tests against system zlib
* WITH_FUZZERS, Build test/fuzz
* WITH_BENCHMARKS, Build test/benchmarks
* WITH_BENCHMARK_APPS, Build application benchmarks
* WITH_NATIVE_INSTRUCTIONS, Instruct the compiler to use the full instruction set on this host (gcc/clang -march=native)
* WITH_MAINTAINER_WARNINGS, Build with project maintainer warnings
* WITH_CODE_COVERAGE, Enable code coverage reporting
* WITH_INFLATE_STRICT, Build with strict inflate distance checking
* WITH_INFLATE_ALLOW_INVALID_DIST, Build with zero fill for inflate invalid distances
* WITH_VPCLMULQDQ, Build with VPCLMULQDQ
* INSTALL_UTILS, Copy minigzip and minideflate during install
-- Configuring done
-- Generating done
-- Build files have been written to: /home/luna.kuleuven.be/u0079808/software/polars/py-polars/target/x86_64-unknown-linux-gnu/debug/build/libz-ng-sys-1f0805334c6c82d3/out/build
running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--parallel" "12"
Scanning dependencies of target zlib
[ 2%] Building C object CMakeFiles/zlib.dir/adler32.c.o
[ 4%] Building C object CMakeFiles/zlib.dir/adler32_fold.c.o
[ 6%] Building C object CMakeFiles/zlib.dir/chunkset.c.o
[ 8%] Building C object CMakeFiles/zlib.dir/compare256.c.o
[ 10%] Building C object CMakeFiles/zlib.dir/compress.c.o
[ 12%] Building C object CMakeFiles/zlib.dir/crc32_braid.c.o
[ 14%] Building C object CMakeFiles/zlib.dir/crc32_braid_comb.c.o
[ 17%] Building C object CMakeFiles/zlib.dir/cpu_features.c.o
[ 19%] Building C object CMakeFiles/zlib.dir/crc32_fold.c.o
[ 21%] Building C object CMakeFiles/zlib.dir/deflate.c.o
[ 23%] Building C object CMakeFiles/zlib.dir/deflate_fast.c.o
[ 25%] Building C object CMakeFiles/zlib.dir/deflate_huff.c.o
[ 27%] Building C object CMakeFiles/zlib.dir/deflate_medium.c.o
[ 29%] Building C object CMakeFiles/zlib.dir/deflate_quick.c.o
[ 31%] Building C object CMakeFiles/zlib.dir/deflate_rle.c.o
[ 34%] Building C object CMakeFiles/zlib.dir/deflate_slow.c.o
[ 36%] Building C object CMakeFiles/zlib.dir/deflate_stored.c.o
[ 38%] Building C object CMakeFiles/zlib.dir/functable.c.o
[ 40%] Building C object CMakeFiles/zlib.dir/infback.c.o
[ 42%] Building C object CMakeFiles/zlib.dir/inffast.c.o
[ 44%] Building C object CMakeFiles/zlib.dir/inflate.c.o
[ 46%] Building C object CMakeFiles/zlib.dir/inftrees.c.o
[ 48%] Building C object CMakeFiles/zlib.dir/insert_string.c.o
[ 51%] Building C object CMakeFiles/zlib.dir/slide_hash.c.o
[ 53%] Building C object CMakeFiles/zlib.dir/insert_string_roll.c.o
[ 55%] Building C object CMakeFiles/zlib.dir/trees.c.o
[ 57%] Building C object CMakeFiles/zlib.dir/uncompr.c.o
[ 59%] Building C object CMakeFiles/zlib.dir/zutil.c.o
[ 61%] Building C object CMakeFiles/zlib.dir/arch/x86/x86_features.c.o
[ 63%] Building C object CMakeFiles/zlib.dir/arch/x86/slide_hash_avx2.c.o
[ 65%] Building C object CMakeFiles/zlib.dir/arch/x86/chunkset_avx.c.o
[ 68%] Building C object CMakeFiles/zlib.dir/arch/x86/compare256_avx2.c.o
[ 70%] Building C object CMakeFiles/zlib.dir/arch/x86/adler32_avx2.c.o
[ 72%] Building C object CMakeFiles/zlib.dir/arch/x86/adler32_avx512.c.o
[ 74%] Building C object CMakeFiles/zlib.dir/arch/x86/adler32_avx512_vnni.c.o
[ 76%] Building C object CMakeFiles/zlib.dir/arch/x86/chunkset_sse41.c.o
[ 78%] Building C object CMakeFiles/zlib.dir/arch/x86/adler32_sse42.c.o
[ 80%] Building C object CMakeFiles/zlib.dir/arch/x86/insert_string_sse42.c.o
[ 82%] Building C object CMakeFiles/zlib.dir/arch/x86/chunkset_sse2.c.o
[ 85%] Building C object CMakeFiles/zlib.dir/arch/x86/compare256_sse2.c.o
[ 87%] Building C object CMakeFiles/zlib.dir/arch/x86/slide_hash_sse2.c.o
[ 89%] Building C object CMakeFiles/zlib.dir/arch/x86/adler32_ssse3.c.o
[ 91%] Building C object CMakeFiles/zlib.dir/arch/x86/crc32_fold_pclmulqdq.c.o
[ 93%] Building C object CMakeFiles/zlib.dir/gzread.c.o
[ 95%] Building C object CMakeFiles/zlib.dir/gzlib.c.o
[ 97%] Building C object CMakeFiles/zlib.dir/gzwrite.c.o
[100%] Linking C static library libz-ng.a
--- stderr
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_ASM_COMPILER
CMAKE_ASM_FLAGS
CMAKE_CXX_COMPILER
CMAKE_CXX_FLAGS
make: warning: -j12 forced in submake: resetting jobserver mode.
error: Found argument 'qc' which wasn't expected, or isn't valid in this context
USAGE:
ar <SUBCOMMAND>
For more information try --help
make[2]: *** [CMakeFiles/zlib.dir/build.make:760: libz-ng.a] Error 2
make[1]: *** [CMakeFiles/Makefile2:76: CMakeFiles/zlib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
thread 'main' panicked at '
command did not execute successfully, got: exit status: 2
build script failed, must exit now', /home/luna.kuleuven.be/u0079808/.cargo/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.48/src/lib.rs:975:5
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
warning: build failed, waiting for other jobs to finish...
💥 maturin failed
Caused by: Failed to build a native library through cargo
Caused by: Cargo build finished with "exit status: 101": `"cargo" "rustc" "--target" "x86_64-unknown-linux-gnu" "--message-format" "json" "--lib"`With manually running So it looks to me that maturin Edit: This was still with maturin 0.13.2 not 0.13.3. |
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@ghuls Can you try maturin 0.13.3 and aarch64-unknown-linux-gnu target? |
Is there an easy way to run aarch64 binaries on x86_64 with python installed? |
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You can use Docker: Full command: |
|
To run docker containers with arm64 binaries on sudo apt-get install qemu binfmt-support qemu-user-static # Install the qemu packages
docker run --rm --privileged multiarch/qemu-user-static --reset -p yes # This step will execute the registering scriptshttps://www.stereolabs.com/docs/docker/building-arm-container-on-x86/ I got Polars running for arm64 by builidng diff --git a/py-polars/Cargo.toml b/py-polars/Cargo.toml
index aaf29df69..597183e9e 100644
--- a/py-polars/Cargo.toml
+++ b/py-polars/Cargo.toml
@@ -19,7 +19,8 @@ description = "Blazingly fast DataFrame library"
mimalloc = { version = "*", default-features = false }
[target.'cfg(target_os="linux")'.dependencies]
-jemallocator = { version = "0.5", features = ["disable_initial_exec_tls"] }
+#jemallocator = { version = "0.5", features = ["disable_initial_exec_tls"] }
+mimalloc = { version = "*", default-features = false }
[dependencies]
ahash = "0.7"
diff --git a/py-polars/src/lib.rs b/py-polars/src/lib.rs
index 1159339a6..e25d49e41 100644
--- a/py-polars/src/lib.rs
+++ b/py-polars/src/lib.rs
@@ -21,7 +21,8 @@ mod set;
pub mod utils;
#[cfg(target_os = "linux")]
-use jemallocator::Jemalloc;
+//use jemallocator::Jemalloc;
+use mimalloc::MiMalloc;
use lazy::ToExprs;
#[cfg(not(target_os = "linux"))]
use mimalloc::MiMalloc;
@@ -53,7 +54,8 @@ use crate::series::PySeries;
#[global_allocator]
#[cfg(target_os = "linux")]
-static ALLOC: Jemalloc = Jemalloc;
+//static ALLOC: Jemalloc = Jemalloc;
+static ALLOC: MiMalloc = MiMalloc;
#[global_allocator]
#[cfg(not(target_os = "linuxHere is a similar issue: We already have jemallocator with It could also be that it only happens under qemu emulation as I also managed to get a jemalloc warning while trying to get it to work: root@238e1e9be22f:/# LD_PRELOAD=/usr/local/lib/python3.10/site-packages/polars/polars.abi3.so python
<jemalloc>: MADV_DONTNEED does not work (memset will be used instead)
<jemalloc>: (This is the expected behaviour if you are running under QEMU)
Python 3.10.7 (main, Sep 13 2022, 16:13:35) [GCC 10.2.1 20210110] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import polars.polars
qemu: uncaught target signal 5 (Trace/breakpoint trap) - core dumped
Trace/breakpoint trap (core dumped)
root@238e1e9be22f:/# ldd /usr/local/lib/python3.10/site-packages/polars/polars.abi3.so
libm.so.6 => /lib/aarch64-linux-gnu/libm.so.6 (0x0000005509cd6000)
libpthread.so.0 => /lib/aarch64-linux-gnu/libpthread.so.0 (0x0000005509d83000)
libc.so.6 => /lib/aarch64-linux-gnu/libc.so.6 (0x0000005509db4000)
libdl.so.2 => /lib/aarch64-linux-gnu/libdl.so.2 (0x0000005509f29000)
/lib/ld-linux-aarch64.so.1 (0x0000005500000000) |
|
It's the same error on native arm64 container root@fd07873e3328:/io# python3
Python 3.10.4 (main, Jun 29 2022, 12:14:53) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import polars.polars
/usr/local/lib/python3.10/dist-packages/polars/__init__.py:11: UserWarning: polars binary missing!
warnings.warn("polars binary missing!")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: /usr/local/lib/python3.10/dist-packages/polars/polars.abi3.so: cannot allocate memory in static TLS block
>>> exit()
root@fd07873e3328:/io# ldd /usr/local/lib/python3.10/dist-packages/polars/polars.abi3.so
linux-vdso.so.1 (0x0000ffff9c1db000)
libm.so.6 => /lib/aarch64-linux-gnu/libm.so.6 (0x0000ffff99f40000)
libpthread.so.0 => /lib/aarch64-linux-gnu/libpthread.so.0 (0x0000ffff99f20000)
libc.so.6 => /lib/aarch64-linux-gnu/libc.so.6 (0x0000ffff99d70000)
libdl.so.2 => /lib/aarch64-linux-gnu/libdl.so.2 (0x0000ffff99d50000)
/lib/ld-linux-aarch64.so.1 (0x0000ffff9c1a2000)
root@fd07873e3328:/io# uname -a
Linux fd07873e3328 5.15.0-47-generic #51-Ubuntu SMP Fri Aug 12 08:18:32 UTC 2022 aarch64 aarch64 aarch64 GNU/Linux |
|
@messense and with mimalloc as allocator? |
|
mimalloc works fine root@bfc5a3974df3:/io# python3
Python 3.10.4 (main, Jun 29 2022, 12:14:53) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import polars.polars
>>> polars.polars
<module 'polars.polars' from '/usr/local/lib/python3.10/dist-packages/polars/polars.abi3.so'>
>>> exit() |
It also works with jemalloc if we root@9beb31be6257:/io# LD_PRELOAD=/usr/local/lib/python3.10/dist-packages/polars/polars.abi3.so python3
Python 3.10.4 (main, Jun 29 2022, 12:14:53) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import polars.polars
>>> polars.polars
<module 'polars.polars' from '/usr/local/lib/python3.10/dist-packages/polars/polars.abi3.so'> |
|
So the latter is with Jemalloc as allocator? Do you compile polars on aarch64 itself or is it a cross-compile? |
Yes.
Cross compiled from a x86_64 Linux. The build log shows that |
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