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@popgenmethods

popgenmethods

Statistical methods for population genetic analysis

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  1. smcpp smcpp Public

    SMC++ infers population history from whole-genome sequence data.

    C++ 152 35

  2. momi2 momi2 Public

    Infer demographic history with the Moran model

    Python 47 11

  3. pyrho pyrho Public

    Fast inference of fine-scale recombination rates based on fused-LASSO

    Python 44 4

  4. SINGER SINGER Public

    Sampling and inference of genealogies with recombination

    C++ 24 4

  5. lecture_notes lecture_notes Public

    Lecture Notes on Computational and Mathematical Population Genetics

    186 15

  6. LDhelmet LDhelmet Public

    Software package for estimating fine-scale recombination rate.

    C++ 13 1

Repositories

Showing 10 of 12 repositories
  • SINGER Public

    Sampling and inference of genealogies with recombination

    popgenmethods/SINGER’s past year of commit activity
    C++ 24 MIT 4 14 1 Updated Sep 24, 2024
  • pyrho Public

    Fast inference of fine-scale recombination rates based on fused-LASSO

    popgenmethods/pyrho’s past year of commit activity
    Python 44 MIT 4 8 0 Updated Jun 3, 2024
  • momi2 Public

    Infer demographic history with the Moran model

    popgenmethods/momi2’s past year of commit activity
    Python 47 GPL-3.0 11 23 0 Updated Mar 25, 2024
  • smcpp Public

    SMC++ infers population history from whole-genome sequence data.

    popgenmethods/smcpp’s past year of commit activity
    C++ 152 GPL-3.0 35 92 5 Updated Jan 20, 2024
  • spectralHMM Public

    A spectral method for inferring selection from time series data

    popgenmethods/spectralHMM’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Jul 18, 2022
  • spectralTDF Public

    spectralTDF is a software program for computing the transition density function of the Wright-Fisher diffusion process in a population of piecewise constant size.

    popgenmethods/spectralTDF’s past year of commit activity
    0 0 0 0 Updated Jul 16, 2022
  • diCal2 Public

    diCal2 infers complex demographic histories from whole-genome sequencing data

    popgenmethods/diCal2’s past year of commit activity
    Java 5 GPL-3.0 0 0 0 Updated Jul 15, 2022
  • LDhelmet Public

    Software package for estimating fine-scale recombination rate.

    popgenmethods/LDhelmet’s past year of commit activity
    C++ 13 GPL-3.0 1 2 0 Updated Jun 8, 2021
  • lecture_notes Public

    Lecture Notes on Computational and Mathematical Population Genetics

    popgenmethods/lecture_notes’s past year of commit activity
    186 15 0 0 Updated May 5, 2021
  • ldpop Public

    Two locus likelihoods and ARGs under changing population size

    popgenmethods/ldpop’s past year of commit activity
    Python 12 MIT 3 0 0 Updated Apr 7, 2021

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