target, not data!

poquirion · Jul 3, 2015 · 2b85495 · 2b85495
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diff --git a/anat_subject1.mnc.gz b/anat_subject1.mnc.gz
diff --git a/anat_subject2.mnc.gz b/anat_subject2.mnc.gz
diff --git a/demoniak_connectome/connectomes/connectome_rois_subject1.mat b/demoniak_connectome/connectomes/connectome_rois_subject1.mat
diff --git a/demoniak_connectome/connectomes/connectome_rois_subject2.mat b/demoniak_connectome/connectomes/connectome_rois_subject2.mat
diff --git a/demoniak_connectome/graph_prop/graph_prop_rois_subject1.mat b/demoniak_connectome/graph_prop/graph_prop_rois_subject1.mat
diff --git a/demoniak_connectome/graph_prop/graph_prop_rois_subject2.mat b/demoniak_connectome/graph_prop/graph_prop_rois_subject2.mat
diff --git a/demoniak_connectome/logs/PIPE.mat b/demoniak_connectome/logs/PIPE.mat
diff --git a/demoniak_connectome/logs/PIPE_history.txt b/demoniak_connectome/logs/PIPE_history.txt
@@ -0,0 +1,41 @@
+
+*****************************************
+The pipeline PIPE is now being processed.
+Started on 16-May-2015 03:31:32
+user: , host: ade700b10f58, system: unix
+*****************************************
+16-May-2015 03:31:32 mask_rois submitted (1 run / 0 fail / 0 done / 13 left)
+16-May-2015 03:31:33 mask_rois completed (0 run / 0 fail / 1 done / 13 left)
+16-May-2015 03:31:33 connectome_subject1 submitted (1 run / 0 fail / 1 done / 12 left)
+16-May-2015 03:31:33 connectome_subject1 completed (0 run / 0 fail / 2 done / 12 left)
+16-May-2015 03:31:33 connectome_subject2 submitted (1 run / 0 fail / 2 done / 11 left)
+16-May-2015 03:31:34 connectome_subject2 completed (0 run / 0 fail / 3 done / 11 left)
+16-May-2015 03:31:34 graph_prop_rois_subject1 submitted (1 run / 0 fail / 3 done / 10 left)
+16-May-2015 03:31:34 graph_prop_rois_subject1 completed (0 run / 0 fail / 4 done / 10 left)
+16-May-2015 03:31:34 graph_prop_rois_subject2 submitted (1 run / 0 fail / 4 done / 9 left)
+16-May-2015 03:31:35 graph_prop_rois_subject2 completed (0 run / 0 fail / 5 done / 9 left)
+16-May-2015 03:31:35 summary_graph_prop_rois submitted (1 run / 0 fail / 5 done / 8 left)
+16-May-2015 03:31:35 summary_graph_prop_rois completed (0 run / 0 fail / 6 done / 8 left)
+16-May-2015 03:31:35 rmap_seeds_subject1 submitted (1 run / 0 fail / 6 done / 7 left)
+16-May-2015 03:31:37 rmap_seeds_subject1 completed (0 run / 0 fail / 7 done / 7 left)
+16-May-2015 03:31:37 rmap_seeds_subject2 submitted (1 run / 0 fail / 7 done / 6 left)
+16-May-2015 03:31:40 rmap_seeds_subject2 completed (0 run / 0 fail / 8 done / 6 left)
+16-May-2015 03:31:40 average_rmap_PCC submitted (1 run / 0 fail / 8 done / 5 left)
+16-May-2015 03:31:40 average_rmap_PCC completed (0 run / 0 fail / 9 done / 5 left)
+16-May-2015 03:31:40 average_rmap_aMPFC submitted (1 run / 0 fail / 9 done / 4 left)
+16-May-2015 03:31:41 average_rmap_aMPFC completed (0 run / 0 fail / 10 done / 4 left)
+16-May-2015 03:31:41 average_rmap_MTL submitted (1 run / 0 fail / 10 done / 3 left)
+16-May-2015 03:31:41 average_rmap_MTL completed (0 run / 0 fail / 11 done / 3 left)
+16-May-2015 03:31:41 average_rmap_FUS submitted (1 run / 0 fail / 11 done / 2 left)
+16-May-2015 03:31:42 average_rmap_FUS completed (0 run / 0 fail / 12 done / 2 left)
+16-May-2015 03:31:42 average_rmap_PCUNm submitted (1 run / 0 fail / 12 done / 1 left)
+16-May-2015 03:31:42 average_rmap_PCUNm completed (0 run / 0 fail / 13 done / 1 left)
+16-May-2015 03:31:42 average_rmap_dMPFC3 submitted (1 run / 0 fail / 13 done / 0 left)
+16-May-2015 03:31:43 average_rmap_dMPFC3 completed (0 run / 0 fail / 14 done / 0 left)
+
+*********************************************
+The processing of the pipeline is terminated.
+See report below for job completion status.
+16-May-2015 03:31:43
+*********************************************
+All jobs have been successfully completed.
diff --git a/demoniak_connectome/logs/PIPE_jobs.mat b/demoniak_connectome/logs/PIPE_jobs.mat
diff --git a/demoniak_connectome/logs/PIPE_logs.mat b/demoniak_connectome/logs/PIPE_logs.mat
diff --git a/demoniak_connectome/logs/PIPE_logs_backup.mat b/demoniak_connectome/logs/PIPE_logs_backup.mat
diff --git a/demoniak_connectome/logs/PIPE_news_feed.csv b/demoniak_connectome/logs/PIPE_news_feed.csv
@@ -0,0 +1,28 @@
+mask_rois , submitted
+mask_rois , finished
+connectome_subject1 , submitted
+connectome_subject1 , finished
+connectome_subject2 , submitted
+connectome_subject2 , finished
+graph_prop_rois_subject1 , submitted
+graph_prop_rois_subject1 , finished
+graph_prop_rois_subject2 , submitted
+graph_prop_rois_subject2 , finished
+summary_graph_prop_rois , submitted
+summary_graph_prop_rois , finished
+rmap_seeds_subject1 , submitted
+rmap_seeds_subject1 , finished
+rmap_seeds_subject2 , submitted
+rmap_seeds_subject2 , finished
+average_rmap_PCC , submitted
+average_rmap_PCC , finished
+average_rmap_aMPFC , submitted
+average_rmap_aMPFC , finished
+average_rmap_MTL , submitted
+average_rmap_MTL , finished
+average_rmap_FUS , submitted
+average_rmap_FUS , finished
+average_rmap_PCUNm , submitted
+average_rmap_PCUNm , finished
+average_rmap_dMPFC3 , submitted
+average_rmap_dMPFC3 , finished
diff --git a/demoniak_connectome/logs/PIPE_profile.mat b/demoniak_connectome/logs/PIPE_profile.mat
diff --git a/demoniak_connectome/logs/PIPE_profile_backup.mat b/demoniak_connectome/logs/PIPE_profile_backup.mat
diff --git a/demoniak_connectome/logs/PIPE_profile_status.mat b/demoniak_connectome/logs/PIPE_profile_status.mat
diff --git a/demoniak_connectome/logs/PIPE_status.mat b/demoniak_connectome/logs/PIPE_status.mat
diff --git a/demoniak_connectome/logs/PIPE_status_backup.mat b/demoniak_connectome/logs/PIPE_status_backup.mat
diff --git a/demoniak_connectome/network_rois.mnc.gz b/demoniak_connectome/network_rois.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_FUS.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_FUS.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_MTL.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_MTL.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_PCC.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_PCC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_PCUNm.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_PCUNm.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_aMPFC.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_aMPFC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/average_rmap_dMPFC3.mnc.gz b/demoniak_connectome/rmap_seeds/average_rmap_dMPFC3.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_FUS.mnc.gz b/demoniak_connectome/rmap_seeds/mask_FUS.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_MTL.mnc.gz b/demoniak_connectome/rmap_seeds/mask_MTL.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_PCC.mnc.gz b/demoniak_connectome/rmap_seeds/mask_PCC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_PCUNm.mnc.gz b/demoniak_connectome/rmap_seeds/mask_PCUNm.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_aMPFC.mnc.gz b/demoniak_connectome/rmap_seeds/mask_aMPFC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/mask_dMPFC3.mnc.gz b/demoniak_connectome/rmap_seeds/mask_dMPFC3.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_FUS.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_FUS.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_MTL.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_MTL.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_PCC.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_PCC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_PCUNm.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_PCUNm.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_aMPFC.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_aMPFC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject1_dMPFC3.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject1_dMPFC3.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_FUS.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_FUS.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_MTL.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_MTL.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_PCC.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_PCC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_PCUNm.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_PCUNm.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_aMPFC.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_aMPFC.mnc.gz
diff --git a/demoniak_connectome/rmap_seeds/rmap_subject2_dMPFC3.mnc.gz b/demoniak_connectome/rmap_seeds/rmap_subject2_dMPFC3.mnc.gz
diff --git a/demoniak_connectome/summary_graph_prop_rois.csv b/demoniak_connectome/summary_graph_prop_rois.csv
@@ -0,0 +1,3 @@
+"" ,"Dcentrality_FUS" ,"Dcentrality_MTL" ,"Dcentrality_PCC" ,"Dcentrality_PCUNm" ,"Dcentrality_aMPFC" ,"Dcentrality_dMPFC3" ,"avg_clustering" ,"clustering_FUS" ,"clustering_MTL" ,"clustering_PCC" ,"clustering_PCUNm" ,"clustering_aMPFC" ,"clustering_dMPFC3" ,"global_efficiency" ,"local_eff_FUS" ,"local_eff_MTL" ,"local_eff_PCC" ,"local_eff_PCUNm" ,"local_eff_aMPFC" ,"local_eff_dMPFC3" ,"modularity" ,"p2p_FUS_X_PCUNm" ,"p2p_FUS_X_dMPFC3" ,"p2p_MTL_X_FUS" ,"p2p_MTL_X_PCUNm" ,"p2p_MTL_X_dMPFC3" ,"p2p_PCC_X_FUS" ,"p2p_PCC_X_MTL" ,"p2p_PCC_X_PCUNm" ,"p2p_PCC_X_aMPFC" ,"p2p_PCC_X_dMPFC3" ,"p2p_PCUNm_X_dMPFC3" ,"p2p_aMPFC_X_FUS" ,"p2p_aMPFC_X_MTL" ,"p2p_aMPFC_X_PCUNm" ,"p2p_aMPFC_X_dMPFC3"
+"subject1" ,-0.082336934931059 ,1.049795920370983 ,-1.008627452905457 ,0.843953583043339 ,1.049795920370983 ,-1.008627452905457 ,0.451124653655616 ,0.497076023391813 ,0.459770114942529 ,0.644444444444444 ,0.563492063492063 ,0.448275862068966 ,0.444444444444444 ,0.566111111111105 ,0.737816764132554 ,0.726819923371648 ,0.822222222222222 ,0.781305114638448 ,0.721455938697318 ,0.714814814814815 ,0.242929803081318 ,0.141239582906944 ,0.075070365903072 ,0.096046128347765 ,0.446421944905673 ,0.154043111873615 ,0.066724814038672 ,0.181143293099648 ,0.162744837773655 ,-0.211229563599625 ,-0.718156555756277 ,0.013187708188021 ,0.234509506780807 ,0.277140343516354 ,0.446727856799180 ,0.227689881005684
+"subject2" ,0.379959373624655 ,0.261222069366950 ,0.261222069366950 ,-0.926150973210099 ,0.736171286397770 ,-0.807413668952394 ,0.448116477491444 ,0.525691699604743 ,0.471861471861472 ,0.480519480519481 ,0.454545454545455 ,0.473846153846154 ,0.538461538461538 ,0.571498316498311 ,0.761528326745718 ,0.727994227994228 ,0.734487734487734 ,0.700757575757576 ,0.730256410256410 ,0.760683760683761 ,0.292486480971330 ,-0.284337526239261 ,0.016949109924906 ,0.327855447275524 ,-0.094108980828859 ,-0.130590287073705 ,0.277683655412958 ,0.287560099869758 ,0.187992263203391 ,0.336793642061745 ,0.130767115134498 ,0.478370121372169 ,0.323733520761615 ,0.031576560087364 ,0.094266518516331 ,0.116245520021418
diff --git a/...ak_glm_connectome/cambridge100/effect_subject1/effect_effect_subject1_cambridge100.mnc.gz b/...ak_glm_connectome/cambridge100/effect_subject1/effect_effect_subject1_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/effect_subject1/fdr_effect_subject1_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/effect_subject1/fdr_effect_subject1_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/effect_subject1/glm_effect_subject1_cambridge100.mat b/demoniak_glm_connectome/cambridge100/effect_subject1/glm_effect_subject1_cambridge100.mat
diff --git a/...glm_connectome/cambridge100/effect_subject1/perc_disc_effect_subject1_cambridge100.mnc.gz b/...glm_connectome/cambridge100/effect_subject1/perc_disc_effect_subject1_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/effect_subject1/std_effect_subject1_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/effect_subject1/std_effect_subject1_cambridge100.mnc.gz
diff --git a/...iak_glm_connectome/cambridge100/effect_subject1/ttest_effect_subject1_cambridge100.mnc.gz b/...iak_glm_connectome/cambridge100/effect_subject1/ttest_effect_subject1_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject1a_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject1a_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject1b_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject1b_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject1c_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject1c_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject1d_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject1d_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject2a_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject2a_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject2b_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject2b_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject2c_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject2c_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/individual/connectome_subject2d_cambridge100.mat b/demoniak_glm_connectome/cambridge100/individual/connectome_subject2d_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/effect_mean_motor_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor/effect_mean_motor_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/fdr_mean_motor_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor/fdr_mean_motor_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/glm_mean_motor_cambridge100.mat b/demoniak_glm_connectome/cambridge100/mean_motor/glm_mean_motor_cambridge100.mat
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/perc_disc_mean_motor_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor/perc_disc_mean_motor_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/std_mean_motor_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor/std_mean_motor_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor/ttest_mean_motor_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor/ttest_mean_motor_cambridge100.mnc.gz
diff --git a/...onnectome/cambridge100/mean_motor_nofisher/effect_mean_motor_nofisher_cambridge100.mnc.gz b/...onnectome/cambridge100/mean_motor_nofisher/effect_mean_motor_nofisher_cambridge100.mnc.gz
diff --git a/...m_connectome/cambridge100/mean_motor_nofisher/fdr_mean_motor_nofisher_cambridge100.mnc.gz b/...m_connectome/cambridge100/mean_motor_nofisher/fdr_mean_motor_nofisher_cambridge100.mnc.gz
diff --git a/..._glm_connectome/cambridge100/mean_motor_nofisher/glm_mean_motor_nofisher_cambridge100.mat b/..._glm_connectome/cambridge100/mean_motor_nofisher/glm_mean_motor_nofisher_cambridge100.mat
diff --git a/...ectome/cambridge100/mean_motor_nofisher/perc_disc_mean_motor_nofisher_cambridge100.mnc.gz b/...ectome/cambridge100/mean_motor_nofisher/perc_disc_mean_motor_nofisher_cambridge100.mnc.gz
diff --git a/...m_connectome/cambridge100/mean_motor_nofisher/std_mean_motor_nofisher_cambridge100.mnc.gz b/...m_connectome/cambridge100/mean_motor_nofisher/std_mean_motor_nofisher_cambridge100.mnc.gz
diff --git a/...connectome/cambridge100/mean_motor_nofisher/ttest_mean_motor_nofisher_cambridge100.mnc.gz b/...connectome/cambridge100/mean_motor_nofisher/ttest_mean_motor_nofisher_cambridge100.mnc.gz
diff --git a/...ak_glm_connectome/cambridge100/mean_motor_site/effect_mean_motor_site_cambridge100.mnc.gz b/...ak_glm_connectome/cambridge100/mean_motor_site/effect_mean_motor_site_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor_site/fdr_mean_motor_site_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor_site/fdr_mean_motor_site_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor_site/glm_mean_motor_site_cambridge100.mat b/demoniak_glm_connectome/cambridge100/mean_motor_site/glm_mean_motor_site_cambridge100.mat
diff --git a/...glm_connectome/cambridge100/mean_motor_site/perc_disc_mean_motor_site_cambridge100.mnc.gz b/...glm_connectome/cambridge100/mean_motor_site/perc_disc_mean_motor_site_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_motor_site/std_mean_motor_site_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_motor_site/std_mean_motor_site_cambridge100.mnc.gz
diff --git a/...iak_glm_connectome/cambridge100/mean_motor_site/ttest_mean_motor_site_cambridge100.mnc.gz b/...iak_glm_connectome/cambridge100/mean_motor_site/ttest_mean_motor_site_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_subjects/effect_mean_subjects_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_subjects/effect_mean_subjects_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_subjects/fdr_mean_subjects_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_subjects/fdr_mean_subjects_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_subjects/glm_mean_subjects_cambridge100.mat b/demoniak_glm_connectome/cambridge100/mean_subjects/glm_mean_subjects_cambridge100.mat
diff --git a/...iak_glm_connectome/cambridge100/mean_subjects/perc_disc_mean_subjects_cambridge100.mnc.gz b/...iak_glm_connectome/cambridge100/mean_subjects/perc_disc_mean_subjects_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_subjects/std_mean_subjects_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_subjects/std_mean_subjects_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/mean_subjects/ttest_mean_subjects_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/mean_subjects/ttest_mean_subjects_cambridge100.mnc.gz
diff --git a/..._connectome/cambridge100/mean_subjects_site/effect_mean_subjects_site_cambridge100.mnc.gz b/..._connectome/cambridge100/mean_subjects_site/effect_mean_subjects_site_cambridge100.mnc.gz
diff --git a/...glm_connectome/cambridge100/mean_subjects_site/fdr_mean_subjects_site_cambridge100.mnc.gz b/...glm_connectome/cambridge100/mean_subjects_site/fdr_mean_subjects_site_cambridge100.mnc.gz
diff --git a/...ak_glm_connectome/cambridge100/mean_subjects_site/glm_mean_subjects_site_cambridge100.mat b/...ak_glm_connectome/cambridge100/mean_subjects_site/glm_mean_subjects_site_cambridge100.mat
diff --git a/...nnectome/cambridge100/mean_subjects_site/perc_disc_mean_subjects_site_cambridge100.mnc.gz b/...nnectome/cambridge100/mean_subjects_site/perc_disc_mean_subjects_site_cambridge100.mnc.gz
diff --git a/...glm_connectome/cambridge100/mean_subjects_site/std_mean_subjects_site_cambridge100.mnc.gz b/...glm_connectome/cambridge100/mean_subjects_site/std_mean_subjects_site_cambridge100.mnc.gz
diff --git a/...m_connectome/cambridge100/mean_subjects_site/ttest_mean_subjects_site_cambridge100.mnc.gz b/...m_connectome/cambridge100/mean_subjects_site/ttest_mean_subjects_site_cambridge100.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100/networks_cambridge100.mnc.gz b/demoniak_glm_connectome/cambridge100/networks_cambridge100.mnc.gz
diff --git a/..._connectome/cambridge100bis/effect_subject1/effect_effect_subject1_cambridge100bis.mnc.gz b/..._connectome/cambridge100bis/effect_subject1/effect_effect_subject1_cambridge100bis.mnc.gz
diff --git a/...glm_connectome/cambridge100bis/effect_subject1/fdr_effect_subject1_cambridge100bis.mnc.gz b/...glm_connectome/cambridge100bis/effect_subject1/fdr_effect_subject1_cambridge100bis.mnc.gz
diff --git a/...ak_glm_connectome/cambridge100bis/effect_subject1/glm_effect_subject1_cambridge100bis.mat b/...ak_glm_connectome/cambridge100bis/effect_subject1/glm_effect_subject1_cambridge100bis.mat
diff --git a/...nnectome/cambridge100bis/effect_subject1/perc_disc_effect_subject1_cambridge100bis.mnc.gz b/...nnectome/cambridge100bis/effect_subject1/perc_disc_effect_subject1_cambridge100bis.mnc.gz
diff --git a/...glm_connectome/cambridge100bis/effect_subject1/std_effect_subject1_cambridge100bis.mnc.gz b/...glm_connectome/cambridge100bis/effect_subject1/std_effect_subject1_cambridge100bis.mnc.gz
diff --git a/...m_connectome/cambridge100bis/effect_subject1/ttest_effect_subject1_cambridge100bis.mnc.gz b/...m_connectome/cambridge100bis/effect_subject1/ttest_effect_subject1_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1a_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1a_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1b_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1b_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1c_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1c_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1d_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject1d_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2a_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2a_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2b_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2b_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2c_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2c_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2d_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/individual/connectome_subject2d_cambridge100bis.mat
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_motor/effect_mean_motor_cambridge100bis.mnc.gz b/demoniak_glm_connectome/cambridge100bis/mean_motor/effect_mean_motor_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_motor/fdr_mean_motor_cambridge100bis.mnc.gz b/demoniak_glm_connectome/cambridge100bis/mean_motor/fdr_mean_motor_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_motor/glm_mean_motor_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/mean_motor/glm_mean_motor_cambridge100bis.mat
diff --git a/...iak_glm_connectome/cambridge100bis/mean_motor/perc_disc_mean_motor_cambridge100bis.mnc.gz b/...iak_glm_connectome/cambridge100bis/mean_motor/perc_disc_mean_motor_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_motor/std_mean_motor_cambridge100bis.mnc.gz b/demoniak_glm_connectome/cambridge100bis/mean_motor/std_mean_motor_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_motor/ttest_mean_motor_cambridge100bis.mnc.gz b/demoniak_glm_connectome/cambridge100bis/mean_motor/ttest_mean_motor_cambridge100bis.mnc.gz
diff --git a/...ome/cambridge100bis/mean_motor_nofisher/effect_mean_motor_nofisher_cambridge100bis.mnc.gz b/...ome/cambridge100bis/mean_motor_nofisher/effect_mean_motor_nofisher_cambridge100bis.mnc.gz
diff --git a/...ectome/cambridge100bis/mean_motor_nofisher/fdr_mean_motor_nofisher_cambridge100bis.mnc.gz b/...ectome/cambridge100bis/mean_motor_nofisher/fdr_mean_motor_nofisher_cambridge100bis.mnc.gz
diff --git a/...onnectome/cambridge100bis/mean_motor_nofisher/glm_mean_motor_nofisher_cambridge100bis.mat b/...onnectome/cambridge100bis/mean_motor_nofisher/glm_mean_motor_nofisher_cambridge100bis.mat
diff --git a/.../cambridge100bis/mean_motor_nofisher/perc_disc_mean_motor_nofisher_cambridge100bis.mnc.gz b/.../cambridge100bis/mean_motor_nofisher/perc_disc_mean_motor_nofisher_cambridge100bis.mnc.gz
diff --git a/...ectome/cambridge100bis/mean_motor_nofisher/std_mean_motor_nofisher_cambridge100bis.mnc.gz b/...ectome/cambridge100bis/mean_motor_nofisher/std_mean_motor_nofisher_cambridge100bis.mnc.gz
diff --git a/...tome/cambridge100bis/mean_motor_nofisher/ttest_mean_motor_nofisher_cambridge100bis.mnc.gz b/...tome/cambridge100bis/mean_motor_nofisher/ttest_mean_motor_nofisher_cambridge100bis.mnc.gz
diff --git a/..._connectome/cambridge100bis/mean_motor_site/effect_mean_motor_site_cambridge100bis.mnc.gz b/..._connectome/cambridge100bis/mean_motor_site/effect_mean_motor_site_cambridge100bis.mnc.gz
diff --git a/...glm_connectome/cambridge100bis/mean_motor_site/fdr_mean_motor_site_cambridge100bis.mnc.gz b/...glm_connectome/cambridge100bis/mean_motor_site/fdr_mean_motor_site_cambridge100bis.mnc.gz
diff --git a/...ak_glm_connectome/cambridge100bis/mean_motor_site/glm_mean_motor_site_cambridge100bis.mat b/...ak_glm_connectome/cambridge100bis/mean_motor_site/glm_mean_motor_site_cambridge100bis.mat
diff --git a/...nnectome/cambridge100bis/mean_motor_site/perc_disc_mean_motor_site_cambridge100bis.mnc.gz b/...nnectome/cambridge100bis/mean_motor_site/perc_disc_mean_motor_site_cambridge100bis.mnc.gz
diff --git a/...glm_connectome/cambridge100bis/mean_motor_site/std_mean_motor_site_cambridge100bis.mnc.gz b/...glm_connectome/cambridge100bis/mean_motor_site/std_mean_motor_site_cambridge100bis.mnc.gz
diff --git a/...m_connectome/cambridge100bis/mean_motor_site/ttest_mean_motor_site_cambridge100bis.mnc.gz b/...m_connectome/cambridge100bis/mean_motor_site/ttest_mean_motor_site_cambridge100bis.mnc.gz
diff --git a/..._glm_connectome/cambridge100bis/mean_subjects/effect_mean_subjects_cambridge100bis.mnc.gz b/..._glm_connectome/cambridge100bis/mean_subjects/effect_mean_subjects_cambridge100bis.mnc.gz
diff --git a/...iak_glm_connectome/cambridge100bis/mean_subjects/fdr_mean_subjects_cambridge100bis.mnc.gz b/...iak_glm_connectome/cambridge100bis/mean_subjects/fdr_mean_subjects_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/mean_subjects/glm_mean_subjects_cambridge100bis.mat b/demoniak_glm_connectome/cambridge100bis/mean_subjects/glm_mean_subjects_cambridge100bis.mat
diff --git a/...m_connectome/cambridge100bis/mean_subjects/perc_disc_mean_subjects_cambridge100bis.mnc.gz b/...m_connectome/cambridge100bis/mean_subjects/perc_disc_mean_subjects_cambridge100bis.mnc.gz
diff --git a/...iak_glm_connectome/cambridge100bis/mean_subjects/std_mean_subjects_cambridge100bis.mnc.gz b/...iak_glm_connectome/cambridge100bis/mean_subjects/std_mean_subjects_cambridge100bis.mnc.gz
diff --git a/...k_glm_connectome/cambridge100bis/mean_subjects/ttest_mean_subjects_cambridge100bis.mnc.gz b/...k_glm_connectome/cambridge100bis/mean_subjects/ttest_mean_subjects_cambridge100bis.mnc.gz
diff --git a/...ctome/cambridge100bis/mean_subjects_site/effect_mean_subjects_site_cambridge100bis.mnc.gz b/...ctome/cambridge100bis/mean_subjects_site/effect_mean_subjects_site_cambridge100bis.mnc.gz
diff --git a/...nnectome/cambridge100bis/mean_subjects_site/fdr_mean_subjects_site_cambridge100bis.mnc.gz b/...nnectome/cambridge100bis/mean_subjects_site/fdr_mean_subjects_site_cambridge100bis.mnc.gz
diff --git a/..._connectome/cambridge100bis/mean_subjects_site/glm_mean_subjects_site_cambridge100bis.mat b/..._connectome/cambridge100bis/mean_subjects_site/glm_mean_subjects_site_cambridge100bis.mat
diff --git a/...me/cambridge100bis/mean_subjects_site/perc_disc_mean_subjects_site_cambridge100bis.mnc.gz b/...me/cambridge100bis/mean_subjects_site/perc_disc_mean_subjects_site_cambridge100bis.mnc.gz
diff --git a/...nnectome/cambridge100bis/mean_subjects_site/std_mean_subjects_site_cambridge100bis.mnc.gz b/...nnectome/cambridge100bis/mean_subjects_site/std_mean_subjects_site_cambridge100bis.mnc.gz
diff --git a/...ectome/cambridge100bis/mean_subjects_site/ttest_mean_subjects_site_cambridge100bis.mnc.gz b/...ectome/cambridge100bis/mean_subjects_site/ttest_mean_subjects_site_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/cambridge100bis/networks_cambridge100bis.mnc.gz b/demoniak_glm_connectome/cambridge100bis/networks_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_connectome/logs/PIPE.mat b/demoniak_glm_connectome/logs/PIPE.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_history.txt b/demoniak_glm_connectome/logs/PIPE_history.txt
@@ -0,0 +1,83 @@
+
+*****************************************
+The pipeline PIPE is now being processed.
+Started on 16-May-2015 03:33:37
+user: , host: ade700b10f58, system: unix
+*****************************************
+16-May-2015 03:33:38 networks_cambridge100 submitted (1 run / 0 fail / 0 done / 34 left)
+16-May-2015 03:33:38 networks_cambridge100 completed (0 run / 0 fail / 1 done / 34 left)
+16-May-2015 03:33:38 networks_cambridge100bis submitted (1 run / 0 fail / 1 done / 33 left)
+16-May-2015 03:33:39 networks_cambridge100bis completed (0 run / 0 fail / 2 done / 33 left)
+16-May-2015 03:33:39 connectome_subject1a submitted (1 run / 0 fail / 2 done / 32 left)
+16-May-2015 03:33:47 connectome_subject1a completed (0 run / 0 fail / 3 done / 32 left)
+16-May-2015 03:33:47 connectome_subject1b submitted (1 run / 0 fail / 3 done / 31 left)
+16-May-2015 03:33:50 connectome_subject1b completed (0 run / 0 fail / 4 done / 31 left)
+16-May-2015 03:33:50 connectome_subject1c submitted (1 run / 0 fail / 4 done / 30 left)
+16-May-2015 03:33:54 connectome_subject1c completed (0 run / 0 fail / 5 done / 30 left)
+16-May-2015 03:33:54 connectome_subject1d submitted (1 run / 0 fail / 5 done / 29 left)
+16-May-2015 03:33:59 connectome_subject1d completed (0 run / 0 fail / 6 done / 29 left)
+16-May-2015 03:33:59 connectome_subject2a submitted (1 run / 0 fail / 6 done / 28 left)
+16-May-2015 03:34:06 connectome_subject2a completed (0 run / 0 fail / 7 done / 28 left)
+16-May-2015 03:34:06 connectome_subject2b submitted (1 run / 0 fail / 7 done / 27 left)
+16-May-2015 03:34:09 connectome_subject2b completed (0 run / 0 fail / 8 done / 27 left)
+16-May-2015 03:34:09 connectome_subject2c submitted (1 run / 0 fail / 8 done / 26 left)
+16-May-2015 03:34:12 connectome_subject2c completed (0 run / 0 fail / 9 done / 26 left)
+16-May-2015 03:34:12 connectome_subject2d submitted (1 run / 0 fail / 9 done / 25 left)
+16-May-2015 03:34:16 connectome_subject2d completed (0 run / 0 fail / 10 done / 25 left)
+16-May-2015 03:34:16 cambridge100_glm_mean_subjects submitted (1 run / 0 fail / 10 done / 24 left)
+16-May-2015 03:34:17 cambridge100_glm_mean_subjects completed (0 run / 0 fail / 11 done / 24 left)
+16-May-2015 03:34:17 cambridge100_glm_effect_subject1 submitted (1 run / 0 fail / 11 done / 23 left)
+16-May-2015 03:34:18 cambridge100_glm_effect_subject1 completed (0 run / 0 fail / 12 done / 23 left)
+16-May-2015 03:34:18 cambridge100_glm_mean_motor submitted (1 run / 0 fail / 12 done / 22 left)
+16-May-2015 03:34:19 cambridge100_glm_mean_motor completed (0 run / 0 fail / 13 done / 22 left)
+16-May-2015 03:34:19 cambridge100_glm_mean_motor_nofisher submitted (1 run / 0 fail / 13 done / 21 left)
+16-May-2015 03:34:20 cambridge100_glm_mean_motor_nofisher completed (0 run / 0 fail / 14 done / 21 left)
+16-May-2015 03:34:20 cambridge100_glm_mean_motor_site submitted (1 run / 0 fail / 14 done / 20 left)
+16-May-2015 03:34:22 cambridge100_glm_mean_motor_site completed (0 run / 0 fail / 15 done / 20 left)
+16-May-2015 03:34:22 cambridge100_glm_mean_subjects_site submitted (1 run / 0 fail / 15 done / 19 left)
+16-May-2015 03:34:23 cambridge100_glm_mean_subjects_site completed (0 run / 0 fail / 16 done / 19 left)
+16-May-2015 03:34:23 cambridge100bis_glm_mean_subjects submitted (1 run / 0 fail / 16 done / 18 left)
+16-May-2015 03:34:24 cambridge100bis_glm_mean_subjects completed (0 run / 0 fail / 17 done / 18 left)
+16-May-2015 03:34:24 cambridge100bis_glm_effect_subject1 submitted (1 run / 0 fail / 17 done / 17 left)
+16-May-2015 03:34:26 cambridge100bis_glm_effect_subject1 completed (0 run / 0 fail / 18 done / 17 left)
+16-May-2015 03:34:26 cambridge100bis_glm_mean_motor submitted (1 run / 0 fail / 18 done / 16 left)
+16-May-2015 03:34:27 cambridge100bis_glm_mean_motor completed (0 run / 0 fail / 19 done / 16 left)
+16-May-2015 03:34:27 cambridge100bis_glm_mean_motor_nofisher submitted (1 run / 0 fail / 19 done / 15 left)
+16-May-2015 03:34:28 cambridge100bis_glm_mean_motor_nofisher completed (0 run / 0 fail / 20 done / 15 left)
+16-May-2015 03:34:28 cambridge100bis_glm_mean_motor_site submitted (1 run / 0 fail / 20 done / 14 left)
+16-May-2015 03:34:30 cambridge100bis_glm_mean_motor_site completed (0 run / 0 fail / 21 done / 14 left)
+16-May-2015 03:34:30 cambridge100bis_glm_mean_subjects_site submitted (1 run / 0 fail / 21 done / 13 left)
+16-May-2015 03:34:31 cambridge100bis_glm_mean_subjects_site completed (0 run / 0 fail / 22 done / 13 left)
+16-May-2015 03:34:31 permutation_mean_subjects_batch_1 submitted (1 run / 0 fail / 22 done / 12 left)
+16-May-2015 03:34:32 permutation_mean_subjects_batch_1 completed (0 run / 0 fail / 23 done / 12 left)
+16-May-2015 03:34:32 permutation_effect_subject1_batch_1 submitted (1 run / 0 fail / 23 done / 11 left)
+16-May-2015 03:34:32 permutation_effect_subject1_batch_1 completed (0 run / 0 fail / 24 done / 11 left)
+16-May-2015 03:34:32 permutation_mean_motor_batch_1 submitted (1 run / 0 fail / 24 done / 10 left)
+16-May-2015 03:34:32 permutation_mean_motor_batch_1 completed (0 run / 0 fail / 25 done / 10 left)
+16-May-2015 03:34:32 permutation_mean_motor_nofisher_batch_1 submitted (1 run / 0 fail / 25 done / 9 left)
+16-May-2015 03:34:32 permutation_mean_motor_nofisher_batch_1 completed (0 run / 0 fail / 26 done / 9 left)
+16-May-2015 03:34:32 permutation_mean_motor_site_batch_1 submitted (1 run / 0 fail / 26 done / 8 left)
+16-May-2015 03:34:32 permutation_mean_motor_site_batch_1 completed (0 run / 0 fail / 27 done / 8 left)
+16-May-2015 03:34:32 permutation_mean_subjects_site_batch_1 submitted (1 run / 0 fail / 27 done / 7 left)
+16-May-2015 03:34:33 permutation_mean_subjects_site_batch_1 completed (0 run / 0 fail / 28 done / 7 left)
+16-May-2015 03:34:33 permutation_mean_subjects_batch_2 submitted (1 run / 0 fail / 28 done / 6 left)
+16-May-2015 03:34:33 permutation_mean_subjects_batch_2 completed (0 run / 0 fail / 29 done / 6 left)
+16-May-2015 03:34:33 permutation_effect_subject1_batch_2 submitted (1 run / 0 fail / 29 done / 5 left)
+16-May-2015 03:34:33 permutation_effect_subject1_batch_2 completed (0 run / 0 fail / 30 done / 5 left)
+16-May-2015 03:34:33 permutation_mean_motor_batch_2 submitted (1 run / 0 fail / 30 done / 4 left)
+16-May-2015 03:34:33 permutation_mean_motor_batch_2 completed (0 run / 0 fail / 31 done / 4 left)
+16-May-2015 03:34:33 permutation_mean_motor_nofisher_batch_2 submitted (1 run / 0 fail / 31 done / 3 left)
+16-May-2015 03:34:33 permutation_mean_motor_nofisher_batch_2 completed (0 run / 0 fail / 32 done / 3 left)
+16-May-2015 03:34:33 permutation_mean_motor_site_batch_2 submitted (1 run / 0 fail / 32 done / 2 left)
+16-May-2015 03:34:34 permutation_mean_motor_site_batch_2 completed (0 run / 0 fail / 33 done / 2 left)
+16-May-2015 03:34:34 permutation_mean_subjects_site_batch_2 submitted (1 run / 0 fail / 33 done / 1 left)
+16-May-2015 03:34:34 permutation_mean_subjects_site_batch_2 completed (0 run / 0 fail / 34 done / 1 left)
+16-May-2015 03:34:34 summary_findings submitted (1 run / 0 fail / 34 done / 0 left)
+16-May-2015 03:34:34 summary_findings completed (0 run / 0 fail / 35 done / 0 left)
+
+*********************************************
+The processing of the pipeline is terminated.
+See report below for job completion status.
+16-May-2015 03:34:34
+*********************************************
+All jobs have been successfully completed.
diff --git a/demoniak_glm_connectome/logs/PIPE_jobs.mat b/demoniak_glm_connectome/logs/PIPE_jobs.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_logs.mat b/demoniak_glm_connectome/logs/PIPE_logs.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_logs_backup.mat b/demoniak_glm_connectome/logs/PIPE_logs_backup.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_news_feed.csv b/demoniak_glm_connectome/logs/PIPE_news_feed.csv
@@ -0,0 +1,70 @@
+networks_cambridge100 , submitted
+networks_cambridge100 , finished
+networks_cambridge100bis , submitted
+networks_cambridge100bis , finished
+connectome_subject1a , submitted
+connectome_subject1a , finished
+connectome_subject1b , submitted
+connectome_subject1b , finished
+connectome_subject1c , submitted
+connectome_subject1c , finished
+connectome_subject1d , submitted
+connectome_subject1d , finished
+connectome_subject2a , submitted
+connectome_subject2a , finished
+connectome_subject2b , submitted
+connectome_subject2b , finished
+connectome_subject2c , submitted
+connectome_subject2c , finished
+connectome_subject2d , submitted
+connectome_subject2d , finished
+cambridge100_glm_mean_subjects , submitted
+cambridge100_glm_mean_subjects , finished
+cambridge100_glm_effect_subject1 , submitted
+cambridge100_glm_effect_subject1 , finished
+cambridge100_glm_mean_motor , submitted
+cambridge100_glm_mean_motor , finished
+cambridge100_glm_mean_motor_nofisher , submitted
+cambridge100_glm_mean_motor_nofisher , finished
+cambridge100_glm_mean_motor_site , submitted
+cambridge100_glm_mean_motor_site , finished
+cambridge100_glm_mean_subjects_site , submitted
+cambridge100_glm_mean_subjects_site , finished
+cambridge100bis_glm_mean_subjects , submitted
+cambridge100bis_glm_mean_subjects , finished
+cambridge100bis_glm_effect_subject1 , submitted
+cambridge100bis_glm_effect_subject1 , finished
+cambridge100bis_glm_mean_motor , submitted
+cambridge100bis_glm_mean_motor , finished
+cambridge100bis_glm_mean_motor_nofisher , submitted
+cambridge100bis_glm_mean_motor_nofisher , finished
+cambridge100bis_glm_mean_motor_site , submitted
+cambridge100bis_glm_mean_motor_site , finished
+cambridge100bis_glm_mean_subjects_site , submitted
+cambridge100bis_glm_mean_subjects_site , finished
+permutation_mean_subjects_batch_1 , submitted
+permutation_mean_subjects_batch_1 , finished
+permutation_effect_subject1_batch_1 , submitted
+permutation_effect_subject1_batch_1 , finished
+permutation_mean_motor_batch_1 , submitted
+permutation_mean_motor_batch_1 , finished
+permutation_mean_motor_nofisher_batch_1 , submitted
+permutation_mean_motor_nofisher_batch_1 , finished
+permutation_mean_motor_site_batch_1 , submitted
+permutation_mean_motor_site_batch_1 , finished
+permutation_mean_subjects_site_batch_1 , submitted
+permutation_mean_subjects_site_batch_1 , finished
+permutation_mean_subjects_batch_2 , submitted
+permutation_mean_subjects_batch_2 , finished
+permutation_effect_subject1_batch_2 , submitted
+permutation_effect_subject1_batch_2 , finished
+permutation_mean_motor_batch_2 , submitted
+permutation_mean_motor_batch_2 , finished
+permutation_mean_motor_nofisher_batch_2 , submitted
+permutation_mean_motor_nofisher_batch_2 , finished
+permutation_mean_motor_site_batch_2 , submitted
+permutation_mean_motor_site_batch_2 , finished
+permutation_mean_subjects_site_batch_2 , submitted
+permutation_mean_subjects_site_batch_2 , finished
+summary_findings , submitted
+summary_findings , finished
diff --git a/demoniak_glm_connectome/logs/PIPE_profile.mat b/demoniak_glm_connectome/logs/PIPE_profile.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_profile_backup.mat b/demoniak_glm_connectome/logs/PIPE_profile_backup.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_profile_status.mat b/demoniak_glm_connectome/logs/PIPE_profile_status.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_status.mat b/demoniak_glm_connectome/logs/PIPE_status.mat
diff --git a/demoniak_glm_connectome/logs/PIPE_status_backup.mat b/demoniak_glm_connectome/logs/PIPE_status_backup.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_effect_subject1_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_effect_subject1_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_effect_subject1_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_effect_subject1_batch_2.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_batch_2.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_nofisher_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_nofisher_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_nofisher_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_nofisher_batch_2.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_site_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_site_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_motor_site_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_motor_site_batch_2.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_batch_2.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_site_batch_1.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_site_batch_1.mat
diff --git a/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_site_batch_2.mat b/demoniak_glm_connectome/permutation_test/permutation_mean_subjects_site_batch_2.mat
diff --git a/demoniak_glm_connectome/summary_findings.csv b/demoniak_glm_connectome/summary_findings.csv
@@ -0,0 +1,7 @@
+"" ,"cambridge100" ,"cambridge100bis" ,"per_disc" ,"p"
+"mean_subjects" ,0.571600000000000 ,0.571600000000000 ,0.571600000000000 ,0.000000000000000
+"effect_subject1" ,1.000000000000000 ,1.000000000000000 ,1.000000000000000 ,0.166666666666667
+"mean_motor" ,0.512700000000000 ,0.512700000000000 ,0.512700000000000 ,0.000000000000000
+"mean_motor_nofisher" ,0.514500000000000 ,0.514500000000000 ,0.514500000000000 ,0.000000000000000
+"mean_motor_site" ,0.566300000000000 ,0.566300000000000 ,0.566300000000000 ,0.000000000000000
+"mean_subjects_site" ,0.616400000000000 ,0.616400000000000 ,0.616400000000000 ,0.000000000000000
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/effect_avg_fir_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/avg_fir/effect_avg_fir_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/fdr_avg_fir_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/avg_fir/fdr_avg_fir_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/glm_avg_fir_cambridge100.mat b/demoniak_glm_fir/cambridge100/avg_fir/glm_avg_fir_cambridge100.mat
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/perc_disc_avg_fir_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/avg_fir/perc_disc_avg_fir_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/std_avg_fir_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/avg_fir/std_avg_fir_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/avg_fir/ttest_avg_fir_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/avg_fir/ttest_avg_fir_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/networks_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/networks_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/effect_sub1_m_sub2_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/sub1_m_sub2/effect_sub1_m_sub2_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/fdr_sub1_m_sub2_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/sub1_m_sub2/fdr_sub1_m_sub2_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/glm_sub1_m_sub2_cambridge100.mat b/demoniak_glm_fir/cambridge100/sub1_m_sub2/glm_sub1_m_sub2_cambridge100.mat
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/perc_disc_sub1_m_sub2_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/sub1_m_sub2/perc_disc_sub1_m_sub2_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/std_sub1_m_sub2_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/sub1_m_sub2/std_sub1_m_sub2_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100/sub1_m_sub2/ttest_sub1_m_sub2_cambridge100.mnc.gz b/demoniak_glm_fir/cambridge100/sub1_m_sub2/ttest_sub1_m_sub2_cambridge100.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/effect_avg_fir_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/avg_fir/effect_avg_fir_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/fdr_avg_fir_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/avg_fir/fdr_avg_fir_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/glm_avg_fir_cambridge100bis.mat b/demoniak_glm_fir/cambridge100bis/avg_fir/glm_avg_fir_cambridge100bis.mat
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/perc_disc_avg_fir_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/avg_fir/perc_disc_avg_fir_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/std_avg_fir_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/avg_fir/std_avg_fir_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/avg_fir/ttest_avg_fir_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/avg_fir/ttest_avg_fir_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/networks_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/networks_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/effect_sub1_m_sub2_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/effect_sub1_m_sub2_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/fdr_sub1_m_sub2_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/fdr_sub1_m_sub2_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/glm_sub1_m_sub2_cambridge100bis.mat b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/glm_sub1_m_sub2_cambridge100bis.mat
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/perc_disc_sub1_m_sub2_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/perc_disc_sub1_m_sub2_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/std_sub1_m_sub2_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/std_sub1_m_sub2_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/ttest_sub1_m_sub2_cambridge100bis.mnc.gz b/demoniak_glm_fir/cambridge100bis/sub1_m_sub2/ttest_sub1_m_sub2_cambridge100bis.mnc.gz
diff --git a/demoniak_glm_fir/fir/fir_subject1a.mat b/demoniak_glm_fir/fir/fir_subject1a.mat
diff --git a/demoniak_glm_fir/fir/fir_subject1b.mat b/demoniak_glm_fir/fir/fir_subject1b.mat
diff --git a/demoniak_glm_fir/fir/fir_subject1c.mat b/demoniak_glm_fir/fir/fir_subject1c.mat
diff --git a/demoniak_glm_fir/fir/fir_subject1d.mat b/demoniak_glm_fir/fir/fir_subject1d.mat
diff --git a/demoniak_glm_fir/fir/fir_subject2a.mat b/demoniak_glm_fir/fir/fir_subject2a.mat
diff --git a/demoniak_glm_fir/fir/fir_subject2b.mat b/demoniak_glm_fir/fir/fir_subject2b.mat
diff --git a/demoniak_glm_fir/fir/fir_subject2c.mat b/demoniak_glm_fir/fir/fir_subject2c.mat
diff --git a/demoniak_glm_fir/fir/fir_subject2d.mat b/demoniak_glm_fir/fir/fir_subject2d.mat
diff --git a/demoniak_glm_fir/logs/PIPE.mat b/demoniak_glm_fir/logs/PIPE.mat