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Adapt the wolfguy antibody numbering #18

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Adapt the wolfguy antibody numbering #18

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14 changes: 11 additions & 3 deletions abnumber/common.py
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Original file line number Diff line number Diff line change
Expand Up @@ -75,8 +75,8 @@ def is_integer(object):
return isinstance(object, int) or isinstance(object, np.integer)


SUPPORTED_SCHEMES = ['imgt', 'aho', 'chothia', 'kabat']
SUPPORTED_CDR_DEFINITIONS = ['imgt', 'chothia', 'kabat', 'north']
SUPPORTED_SCHEMES = ['imgt', 'aho', 'chothia', 'kabat','wolfguy']
SUPPORTED_CDR_DEFINITIONS = ['imgt', 'chothia', 'kabat', 'north','wolfguy']

SCHEME_BORDERS = {
# Start coordinates
Expand All @@ -91,12 +91,20 @@ def is_integer(object):
'north_H': [23, 36, 50, 59, 93, 103, 114],
'north_K': [24, 35, 49, 57, 89, 98, 108],
'north_L': [24, 35, 49, 57, 89, 98, 108],
'wolfguy_H': [151, 201, 251, 301, 351, 401, 500],
'wolfguy_L': [551, 601, 651, 701, 751, 801, 900],
'wolfguy_K': [551, 601, 651, 701, 751, 801, 900]
}

STARTING_POSITIONS={
'wolfguy_H': 101,
'wolfguy_L':501,
'wolfguy_K':501
}
# { scheme -> { region -> list of position numbers } }
SCHEME_REGIONS = {
scheme: {
'FR1': list(range(1, borders[0])),
'FR1': list(range(STARTING_POSITIONS.get(scheme,1), borders[0])),
'CDR1': list(range(borders[0], borders[1])),
'FR2': list(range(borders[1], borders[2])),
'CDR2': list(range(borders[2], borders[3])),
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2 changes: 1 addition & 1 deletion abnumber/position.py
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Original file line number Diff line number Diff line change
Expand Up @@ -93,7 +93,7 @@ def _sort_key(self):
if self.number in [33, 61, 112]:
# position 112 is sorted in reverse
letter_ord = -letter_ord
elif self.scheme in ['chothia', 'kabat', 'aho']:
elif self.scheme in ['chothia', 'kabat', 'aho','wolfguy']:
# all letters are sorted alphabetically for these schemes
pass
else:
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