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PFB2018 Schedule
Sofia Robb edited this page Sep 25, 2018
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| Time | Description | Who | Location |
|---|---|---|---|
| Sun, Oct 14 | |||
| 7:00PM - 9:00PM | Social: Meet and Greet | All | Bar |
| Mon, Oct 15 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Unix 1 | Simon | Hereshy |
| 9:45AM - 9:55AM | Break | Hereshy | |
| 9:55AM - 10:30AM | Lecture: Unix 1 continued | Simon | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | TAs | Hereshy |
| 12:30PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 3:30 | Lecture: Unix 2 | Sofia | Hereshy |
| 2:45PM - 2:55PM | Break | Hereshy | |
| 2:55PM - 3:30PM | Lecture: Unix 2 continued | Sofia | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | TAs | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Review Section: Command line and git | Demitri and Jessen | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | TAs | Hereshy |
| Tue, Oct 16 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Python 1 | Simon | Hereshy |
| 9:45AM - 9:55AM | Break | Hereshy | |
| 9:55AM - 10:30AM | Lecture: Python 1 continued | Simon | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:45PM | Lecture: Python 2 | Sofia | Hereshy |
| 2:45PM - 2:55PM | Break | Hereshy | |
| 2:55PM - 3:30PM | Lecture: Python 2 continued | Sofia | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | TAs | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Review Section: vi and emacs | TAs | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | TAs | Hereshy |
| Wed, Oct 17 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Python 3 | Simon | Hereshy |
| 9:45AM - 9:55AM | Break | Hereshy | |
| 9:55AM - 10:30AM | Lecture: Python 3 continued | Simon | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:45PM | Lecture: Python 4 | Sofia | Hereshy |
| 2:45PM - 2:55PM | Break | Hereshy | |
| 2:55PM - 3:30PM | Lecture: Python 4 continued | Sofia | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | TAs | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Review Section | TA | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | TAs | Hereshy |
| Thu, Oct 18 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Morning Lecture Part I | Instructor | Hereshy |
| 9:45AM - 9:55AM | Break | Instructor | Hereshy |
| 9:55AM - 10:30AM | Lecture: Morning Lecture Part II | Instructor | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | Instructor | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:45PM | Lecture: Afternoon Lecture Part I | Instructor | Hereshy |
| 2:45PM - 2:55PM | Break | Instructor | Hereshy |
| 2:55PM - 3:30PM | Lecture: Afternoon Lecture Part II | Instructor | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | Instructor | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Review Section | TA | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | Instructor | Hereshy |
| Fri, Oct 19 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Morning Lecture Part I | Instructor | Hereshy |
| 9:45AM - 9:55AM | Break | Instructor | Hereshy |
| 9:55AM - 10:30AM | Lecture: Morning Lecture Part II | Instructor | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | Instructor | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:45PM | Lecture: Afternoon Lecture Part I | Instructor | Hereshy |
| 2:45PM - 2:55PM | Break | Instructor | Hereshy |
| 2:55PM - 3:30PM | Lecture: Afternoon Lecture Part II | Instructor | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | Instructor | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Review Section | TA | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | Instructor | Hereshy |
| Sat, Oct 20 | Day Off | ||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| Sun, Oct 21 | Day Off | ||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Lecture: Python 10: Classes, BioPython | Simon | Hereshy |
| 9:45AM - 9:55AM | Break | Instructor | Hereshy |
| 9:55AM - 10:30AM | Lecture: Morning Lecture Part II | Instructor | Hereshy |
| 10:30AM - 12:00PM | Practical: Morning Problem Sets | Instructor | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:45PM | Lecture: NGS File types | Mike Campbell | Hereshy |
| 2:45PM - 2:55PM | Break | Instructor | Hereshy |
| 2:55PM - 3:30PM | Lecture: Afternoon Lecture Part II | Instructor | Hereshy |
| 3:30PM - 5:30PM | Practical: Afternoon Problem Sets | Instructor | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Lecture: Structural Variation | Tomas | Hereshy |
| 8:00PM - 11:00PM | Practical: Evening Problem Sets | Instructor | Hereshy |
| Mon, Oct 22 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:55AM | Lecture: Sequence Similarity | Brandi Cantarel | Hereshy |
| 9:55AM - 10:00AM | Break | Instructor | Hereshy |
| 10:00AM - 12:00PM | Practical: Sequence Similarity | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 4:00PM | Practical: Sequence Similarity Continued or Any Problem Sets | TAs | Hereshy |
| 4:00PM - 5:00PM | Practical: Genome Assembly, Get it running! | Deb Triant | Hereshy |
| 6:00PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 8:00PM | Lecture: Genome Assembly | Deb Triant | Hereshy |
| 8:00PM - 11:00PM | Practical: Genome Assembly | TAs | Hereshy |
| Tue, Oct 23 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:55AM | Lecture: Pipelines | Simon | Hereshy |
| 9:55AM - 10:00AM | Break | Instructor | Hereshy |
| 10:00AM - 12:00PM | Practical: Problem Sets | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:55PM | Lecture: Aligners | Alex Dobin | Hereshy |
| 2:55PM - 3:00PM | Break | Hereshy | |
| 3:00PM - 3:55PM | Lecture: Aligners | Alex Dobin | Hereshy |
| 3:55PM - 4:00PM | Break | Hereshy | |
| 4:00PM - 6:00PM | Practical:Aligners | TAs | Hereshy |
| 6:00PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Practical: Any Problem Sets | TAs | Hereshy |
| Wed, Oct 24 | Day Off | ||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:55AM | Lecture: RNASeq | Brian Haas | Hereshy |
| 9:55AM - 10:00AM | Break | Instructor | Hereshy |
| 10:00AM - 12:00PM | ecture: RNASeq | Brian Haas | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:55PM | Practical: RNASeq | TAs | Hereshy |
| 2:55PM - 3:00PM | Break | Hereshy | |
| 3:00PM - 3:55PM | Practical: RNASeq | TAs | Hereshy |
| 3:55PM - 4:00PM | Break | Hereshy | |
| 4:00PM - 6:00PM | Practical: RNASeq or Problem Sets | TAs | Hereshy |
| 6:00PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Lecture: Ethics and Responsibility | Simon/Sofia | Hereshy |
| Thr, Oct 25 | Afternoon Off Evening Off | ||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:55AM | Lecture: GMOD | Scott Cain | Hereshy |
| 9:55AM - 10:00AM | Break | Instructor | Hereshy |
| 10:00AM - 12:00PM | Workshop: GMOD | Brian Haas | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:55PM | Afternoon Off | All | |
| 6:00PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Evening off Off | All | |
| Fri, Oct 26 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:55AM | Lecture: Ontologies for Biology | Nicole | Hereshy |
| 9:55AM - 10:00AM | Break | Instructor | Hereshy |
| 10:00AM - 12:00PM | Practical: Ontologies | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 2:55PM | Lecture: Protein Function Annotation | Paul Thomas | Hereshy |
| 2:55PM - 3:00PM | Break | Hereshy | |
| 3:00PM - 3:55PM | Practical: Protein Function Annoation | TAs | Hereshy |
| 3:55PM - 4:00PM | Break | Hereshy | |
| 4:00PM - 5:00PM | Practical: Protein Function Annoation | TAs | Hereshy |
| 6:00PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Project Sign Up and Organization | All | Hereshy |
| Sat, Oct 27 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 12:00PM | Projects | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 5:30AM | Projects | TAs | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Projects | TAs | Hereshy |
| Sun, Oct 28 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 12:00PM | Projects | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 5:30AM | Projects | TAs | Hereshy |
| 5:30PM - 7:00PM | Dinner | All | Blackford |
| 7:00PM - 11:00PM | Projects | TAs | Hereshy |
| Mon, Oct 29 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 12:00PM | Projects | TAs | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 2:00PM - 3:30PM | Projects | TAs | Hereshy |
| 3:00PM - 5:30AM | Projects Presentions | ALL | Hereshy |
| 5:30PM - 7:00PM | Banaquet | All | Blackford |
| Tue, Oct 30 | |||
| 7:30AM - 9:00AM | Breakfast | All | Blackford |
| 9:00AM - 9:45AM | Departure | Everyone | |
| 9:45AM - 9:55AM | Break | Instructor | Hereshy |
| 12:00PM - 2:00PM | Lunch | All | Blackford |
| 5:30PM - 7:00PM | Dinner | All | Blackford |