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32 Open 130 Closed
32 Open 130 Closed
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Issues list

Compatibility Issue: java.lang.NoSuchMethodError with glow.py on PySpark 3.5.1
#724 opened Nov 4, 2024 by nickzren
1
Writing sharded VCF fails on read
#693 opened Aug 15, 2024 by tamirkamara
Tried spark.sql("RESET") not worked
#685 opened Jul 22, 2024 by Kumaranhadoop
Feature Request: add regenie's gene-based testing enhancement New feature or request
#540 opened Dec 12, 2023 by jjfarrell
glow.normalize_variant fails with NullPointerException in NormalizeVariantExpr.scala:55
#536 opened Oct 12, 2023 by nickorka
4
Interaction Tests with GLOW enhancement New feature or request
#530 opened May 18, 2023 by jjfarrell
1
Set explicit guidelines when running large jobs
#459 opened Dec 7, 2021 by williambrandler
ValueError: Some of types cannot be determined after inferring
#447 opened Nov 16, 2021 by williambrandler
Phenotypes and Covariates not automatically filtered to match genotype table enhancement New feature or request
#401 opened Aug 23, 2021 by williambrandler
Approx firth does not handle failed fit gracefully enhancement New feature or request
#395 opened Jul 28, 2021 by bcajes
Better handling of missing phenotypes in step 1 and step 2 of GloWGR
#393 opened Jul 23, 2021 by williambrandler
Better handling of spark configs
#378 opened Jun 1, 2021 by bcajes
5
Improve pipe transformer observability
#375 opened May 27, 2021 by dmoore247
1
Cannot flatten info field names containing points
#371 opened May 11, 2021 by Hoeze
2
mean_substitute minimal example in API fails with Invalid call to dataType on unresolved object, tree: lambda '3[sum]
#369 opened Apr 29, 2021 by williambrandler
reading VCF as a streaming datasource in python
#361 opened Apr 1, 2021 by williambrandler
@kianfar77
1
Add tips to troubleshooting page
#356 opened Mar 16, 2021 by karenfeng
1
Memory errors writing regression results
#351 opened Feb 25, 2021 by bbsun92
10
Saddle point approximation method produces low P values when minor allele count is low
#350 opened Feb 22, 2021 by williambrandler
Python type casting for sample_id in pandas dataframe
#348 opened Feb 19, 2021 by williambrandler
Unexpected behavior when reading multiple gVCFs with tabix indices and same base name
#332 opened Jan 27, 2021 by williambrandler
Add parameters to control max iterations and tolerance in logistic regression fit good first issue Good for newcomers
#331 opened Jan 27, 2021 by henrydavidge
1
Option to consider last allele as reference in BGEN reader good first issue Good for newcomers
#330 opened Jan 27, 2021 by henrydavidge
1
Slow Databricks GLOW implementation
#321 opened Jan 13, 2021 by bbsun92
5
split_multiallelics replaces some genotypes fields by null and drops filters column
#315 opened Dec 2, 2020 by olesya13
@kianfar77
2
ProTip! no:milestone will show everything without a milestone.