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The MEME Suite allows you to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses.

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singularity-meme-suite

Singularity recipe for meme-suite.

Installing the container on Bridges 2

Copy the

  • SIF file
  • and the meme-suite scripts

to /opt/packages/meme-suite/5.4.1.

Copy the file modulefile.lua to /opt/modulefiles/meme-suite as 5.4.1.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

Copyright © 2020-2022 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

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The MEME Suite allows you to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses.

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