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22 changes: 11 additions & 11 deletions content/pages/about.html
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<html>
<head>
<title>About StudyForrest</title>
<meta name="save_as" content="about.html" />
<meta name="url" content="about.html" />
<meta name="save_as" content="about.html">
<meta name="url" content="about.html">
</head>
<body>
<p>This project is an open invitation to anyone and everyone to participate in
Expand Down Expand Up @@ -56,15 +56,15 @@ <h2>Acknowledgements</h2>
acquisition instruments.</p>

<div class="thanks-logos">
<a href="https://www.bmbf.de/en/index.html"><img src="/img/logo/bmbf.svg" alt="German Federal Ministry of Education and Research (BMBF) Logo" /></a>
<a href="https://www.fz-juelich.de/portal/EN/"><img src="/img/logo/fzj.svg" alt="Forschungszentrum Jülich Logo" /></a>
<a href="https://www.nsf.gov"><img src="/img/logo/nsf.svg" alt="National Science Foundation Logo" /></a>
<a href="http://www.cbbs.eu"><img src="/img/logo/cbbs.svg" alt="Center for Behavioral Brain Sciences Logo" /></a>
<a href="https://www.sachsen-anhalt.de/lang/english/sachsen-anhalt/"><img src="/img/logo/lsa.svg" alt="German State of Sachsen-Anhalt" /></a>
<a href="https://ec.europa.eu/regional_policy/en/funding/erdf/"><img src="/img/logo/erdf.svg" alt="European Reginal Development Fund" /></a>
<a href="https://www.ovgu.de"><img src="/img/logo/ovgu.svg" alt="Otto-von-Guericke-University Magdeburg Logo" /></a>
<a href="https://www.lin-magdeburg.de"><img src="/img/logo/lin.svg" alt="Leibniz Institute for Neurobiology in Magdeburg Logo" /></a>
<a href="http://cni.ifn-magdeburg.de"><img src="/img/logo/cni.svg" alt="Combinatorial Neuroimaging Core Facility Logo" /></a>
<a href="https://www.bmbf.de/en/index.html"><img src="/img/logo/bmbf.svg" alt="German Federal Ministry of Education and Research (BMBF) Logo"></a>
<a href="https://www.fz-juelich.de/portal/EN/"><img src="/img/logo/fzj.svg" alt="Forschungszentrum Jülich Logo"></a>
<a href="https://www.nsf.gov"><img src="/img/logo/nsf.svg" alt="National Science Foundation Logo"></a>
<a href="http://www.cbbs.eu"><img src="/img/logo/cbbs.svg" alt="Center for Behavioral Brain Sciences Logo"></a>
<a href="https://www.sachsen-anhalt.de/lang/english/sachsen-anhalt/"><img src="/img/logo/lsa.svg" alt="German State of Sachsen-Anhalt"></a>
<a href="https://ec.europa.eu/regional_policy/en/funding/erdf/"><img src="/img/logo/erdf.svg" alt="European Reginal Development Fund"></a>
<a href="https://www.ovgu.de"><img src="/img/logo/ovgu.svg" alt="Otto-von-Guericke-University Magdeburg Logo"></a>
<a href="https://www.lin-magdeburg.de"><img src="/img/logo/lin.svg" alt="Leibniz Institute for Neurobiology in Magdeburg Logo"></a>
<a href="http://cni.ifn-magdeburg.de"><img src="/img/logo/cni.svg" alt="Combinatorial Neuroimaging Core Facility Logo"></a>
</div>
</body>
</html>
10 changes: 5 additions & 5 deletions content/pages/access.html
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<html>
<head>
<title>Data Access</title>
<meta name="save_as" content="access.html" />
<meta name="url" content="access.html" />
<meta name="save_as" content="access.html">
<meta name="url" content="access.html">
</head>
<body>
<p>All <em>StudyForrest</em> data are contained in a collection of
Expand Down Expand Up @@ -66,9 +66,9 @@ <h2>Hosting</h2>
<p>We are grateful to our data hosting providers for their support, sponsored
bandwidth, and storage capacity.</p>
<div class="thanks-logos">
<a href="https://gin.g-node.org"><img src="/img/logo/gin.svg" alt="GIN Logo" /></a>
<a href="https://www.fz-juelich.de/portal/EN/"><img src="/img/logo/fzj.svg" alt="Forschungszentrum Jülich Logo" /></a>
<a href="https://openneuro.org"><img src="/img/logo/openneuro.svg" alt="OpenNeuro Logo" /></a>
<a href="https://gin.g-node.org"><img src="/img/logo/gin.svg" alt="GIN Logo"></a>
<a href="https://www.fz-juelich.de/portal/EN/"><img src="/img/logo/fzj.svg" alt="Forschungszentrum Jülich Logo"></a>
<a href="https://openneuro.org"><img src="/img/logo/openneuro.svg" alt="OpenNeuro Logo"></a>
</div>
</body>
</html>
46 changes: 23 additions & 23 deletions content/pages/data.html
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<html>
<head>
<title>Overview of Data Types</title>
<meta name="save_as" content="data.html" />
<meta name="url" content="data.html" />
<meta name="save_as" content="data.html">
<meta name="url" content="data.html">
</head>
<body>
<p>Since its inception, the <em>StudyForrest</em> dataset has grown
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<form action='javascript:void(0)'
onSubmit='filterForm(document.getElementById("data_filter_field").value);'
onReset='filterForm("")'>
<input id='data_filter_field' type="text" placeholder="Filter data types for..." aria-label="Filter data types for..." /><button title='Filter Table' type="submit"><span class="icon-filter"></span></button>
<input id='data_filter_field' type="text" placeholder="Filter data types for..." aria-label="Filter data types for..."><button title='Filter Table' type="submit"><span class="icon-filter"></span></button>
<input type="reset" value="Reset">
</form>
<noscript>
Expand All @@ -39,7 +39,7 @@ <h2>Behavior and Brain Function</h2>
<div class='thumbnail'>
<img src="/img/data/thumb_moviefmri_acq_ao_hrfmri.jpg"
alt='Person hearing a movie, with recording of brainfunction,
heartbeat, and breathing.' />
heartbeat, and breathing.'>
</div>
<div class='description'>
<h3>High-res 7T fMRI on 2h Audio Movie (+Cardiac/Respiration)</h3>
Expand All @@ -61,7 +61,7 @@ <h3>High-res 7T fMRI on 2h Audio Movie (+Cardiac/Respiration)</h3>
<div class='thumbnail'>
<img src="/img/data/thumb_musicfmri_acq.jpg"
alt='Person hearing music, with recording of brainfunction,
heartbeat, and breathing.' />
heartbeat, and breathing.'>
</div>
<div class='description'>
<h3>High-res 7T fMRI Listening to Music (+Cardiac/Respiration)</h3>
Expand All @@ -84,7 +84,7 @@ <h3>High-res 7T fMRI Listening to Music (+Cardiac/Respiration)</h3>
<div class='thumbnail'>
<img src="/img/data/thumb_moviefmri_acq_av_lrfmri_eyegaze.jpg"
alt='Person watching and hearing a movie, with recording of
brainfunction, heartbeat, and breathing.' />
brainfunction, heartbeat, and breathing.'>
</div>
<div class='description'>
<h3>3T fMRI on 2h Movie, Eyegaze (+Cardiac/Respiration)</h3>
Expand All @@ -103,7 +103,7 @@ <h3>3T fMRI on 2h Movie, Eyegaze (+Cardiac/Respiration)</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_retmap_acq.jpg"
alt='Retinotopic Map' />
alt='Retinotopic Map'>
</div>
<div class='description'>
<h3>Retinotopic Mapping</h3>
Expand All @@ -124,7 +124,7 @@ <h3>Retinotopic Mapping</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_visloc_acq.jpg"
alt='Brain with person, face, stapler, and house' />
alt='Brain with person, face, stapler, and house'>
</div>
<div class='description'>
<h3>Higher Visual Area Localizer</h3>
Expand All @@ -144,7 +144,7 @@ <h3>Higher Visual Area Localizer</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_orientfmri_acq.jpg"
alt='Sample visual stimulus with high contrast parallel lines' />
alt='Sample visual stimulus with high contrast parallel lines'>
</div>
<div class='description'>
<h3>Multi-res 3T/7T fMRI (0.8-3mm) on Visual Orientation</h3>
Expand All @@ -170,7 +170,7 @@ <h2>Brain Structure and Connectivity</h2>

<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_t1w.jpg" alt='T1 brain image' />
<img src="/img/data/thumb_t1w.jpg" alt='T1 brain image'>
</div>
<div class='description'>
<h3>T1-weighted MRI</h3>
Expand All @@ -191,7 +191,7 @@ <h3>T1-weighted MRI</h3>

<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_t2w.jpg" alt='T2 brain image' />
<img src="/img/data/thumb_t2w.jpg" alt='T2 brain image'>
</div>
<div class='description'>
<h3>T2-weighted MRI</h3>
Expand All @@ -210,7 +210,7 @@ <h3>T2-weighted MRI</h3>

<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_swi.jpg" alt='SWI brain image' />
<img src="/img/data/thumb_swi.jpg" alt='SWI brain image'>
</div>
<div class='description'>
<h3>Susceptibility-weighted MRI</h3>
Expand All @@ -230,7 +230,7 @@ <h3>Susceptibility-weighted MRI</h3>

<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_dti.jpg" alt='DTI brain image' />
<img src="/img/data/thumb_dti.jpg" alt='DTI brain image'>
</div>
<div class='description'>
<h3>Diffusion-weighted MRI</h3>
Expand All @@ -253,7 +253,7 @@ <h3>Diffusion-weighted MRI</h3>

<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_angio.jpg" alt='Angiography' />
<img src="/img/data/thumb_angio.jpg" alt='Angiography'>
</div>
<div class='description'>
<h3>Angiography</h3>
Expand All @@ -274,7 +274,7 @@ <h3>Angiography</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_surf.jpg"
alt="Closeup of FreeSurfer's cortical surface reconstruction" />
alt="Closeup of FreeSurfer's cortical surface reconstruction">
</div>
<div class='description'>
<h3>Cortical Surface Reconstruction</h3>
Expand Down Expand Up @@ -302,7 +302,7 @@ <h2>Movie Stimulus Annotations</h2>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_locationtime.jpg"
alt='Four shots from the same scene, but in different locations.' />
alt='Four shots from the same scene, but in different locations.'>
</div>
<div class='description'>
<h3>Cuts, Depicted Locations, and Temporal Progression</h3>
Expand All @@ -324,7 +324,7 @@ <h3>Cuts, Depicted Locations, and Temporal Progression</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_speech.jpg"
alt='Forrest shaking the hand of Lt. Dan. Captioned.' />
alt='Forrest shaking the hand of Lt. Dan. Captioned.'>
</div>
<div class='description'>
<h3>Speech</h3>
Expand All @@ -344,7 +344,7 @@ <h3>Speech</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_emotion.jpg"
alt='Closeup on the face of an excited man.' />
alt='Closeup on the face of an excited man.'>
</div>
<div class='description'>
<h3>Portrayed Emotions</h3>
Expand All @@ -364,7 +364,7 @@ <h3>Portrayed Emotions</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_irony.jpg"
alt="A sign saying 'Hidden Beach'; CC-BY from https://www.flickr.com/photos/carbonnyc/76468122" />
alt="A sign saying 'Hidden Beach'; CC-BY from https://www.flickr.com/photos/carbonnyc/76468122">
</div>
<div class='description'>
<h3>Semantic Conflict</h3>
Expand All @@ -381,7 +381,7 @@ <h3>Semantic Conflict</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_bodycontact.jpg"
alt='Young Forrest and young Jenny hold hands.' />
alt='Young Forrest and young Jenny hold hands.'>
</div>
<div class='description'>
<h3>Body Contact</h3>
Expand All @@ -401,7 +401,7 @@ <h3>Body Contact</h3>
<div class='thumbnail'>
<img src="/img/data/thumb_annot_eyegaze.jpg"
alt='Forrest pointing to flashlights in the Watergate building,
with eyetracking data overlaid.' />
with eyetracking data overlaid.'>
</div>
<div class='description'>
<h3>Eye Movement Labels</h3>
Expand All @@ -421,7 +421,7 @@ <h3>Eye Movement Labels</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_music.jpg"
alt='The word "Music", stylized. CC-BY-SA https://commons.wikimedia.org/wiki/File:Maroper_Music.jpg' />
alt='The word "Music", stylized. CC-BY-SA https://commons.wikimedia.org/wiki/File:Maroper_Music.jpg'>
</div>
<div class='description'>
<h3>Music</h3>
Expand All @@ -436,7 +436,7 @@ <h3>Music</h3>
<div class="card-data">
<div class='thumbnail'>
<img src="/img/data/thumb_annot_confounds.png"
alt='Low and high volume and brightness. Icons by svgrepo.com; CC0 1.0 Universal PD Dedication' />
alt='Low and high volume and brightness. Icons by svgrepo.com; CC0 1.0 Universal PD Dedication'>
</div>
<div class='description'>
<h3>Low-Level Perceptual Confounds</h3>
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6 changes: 3 additions & 3 deletions content/pages/explore.html
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<html>
<head>
<title>Explore</title>
<meta name="save_as" content="explore.html" />
<meta name="url" content="explore.html" />
<meta name="save_as" content="explore.html">
<meta name="url" content="explore.html">
</head>
<body>
<noscript>
Expand Down Expand Up @@ -147,7 +147,7 @@ <h2>Brain Parcellations</h2>
subject, allowing for a quick quality inspection.
</p>
<img src="/img/freesurfer_parcellations.webp" alt="FreeSurfer Parcellation Animation"
class="explore-parcellation" />
class="explore-parcellation">

<h2>Functional Data Quality</h2>
<p>Since head movement during the acquisition of a functional MRI time series
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16 changes: 8 additions & 8 deletions content/pages/index.html
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<html>
<head>
<title>StudyForrest</title>
<meta name="template" content="index" />
<meta name="save_as" content="index.html" />
<meta name="url" content="index.html" />
<meta name="template" content="index">
<meta name="save_as" content="index.html">
<meta name="url" content="index.html">
</head>
<body>
<div class='index-content'>
Expand Down Expand Up @@ -82,7 +82,7 @@ <h2>How are People Using It?</h2>
<blockquote> [&hellip;] we use fMRI activity evoked by an emotionally
charged movie and continuous ratings of the perceived emotion
intensity to reveal the topographic organization of affective states.
<br />&mdash;
<br>&mdash;
<a href="https://doi.org/10.1038/s41467-019-13599-z">
Lettieri et al., Nature Comm., 2019</a>
</blockquote>
Expand All @@ -92,7 +92,7 @@ <h2>How are People Using It?</h2>
good health or disease. [&hellip;] A critical analysis
of cortical parcellation protocols from FreeSurfer, BrainSuite,
BrainVISA and BrainGyrusMapping revealed major limitations.
<br />&mdash;
<br>&mdash;
<a href="https://doi.org/10.1016/j.neuroimage.2017.02.082">
Mikhael et al., NeuroImage, 2018</a>
</blockquote>
Expand All @@ -101,14 +101,14 @@ <h2>How are People Using It?</h2>
by fMRI during film watching is both sensitive and specific to event
boundaries, identifying a potential mechanism whereby event
boundaries shape experience by modulation of hippocampal activity.
<br />&mdash;
<br>&mdash;
<a href="https://doi.org/10.1523/JNEUROSCI.0524-18.2018">
Ben-Yakov &amp; Henson, J Neuroscience, 2018</a>
</blockquote>

<blockquote>[&hellip;] magnetic resonance advection imaging might have future
potential to contribute to the modeling of the cerebrovascular system and
to serve as a biomarker for cerebrovascular disease. <br />&mdash;
to serve as a biomarker for cerebrovascular disease. <br>&mdash;
<a href="https://doi.org/10.1177/0271678X16651449">
Voss et al., Journal of Cerebral Blood Flow & Metabolism, 2016</a>
</blockquote>
Expand All @@ -117,7 +117,7 @@ <h2>How are People Using It?</h2>
individual [brain] responses [&hellip;] to assess the degree to which
functional topography is shared across subjects. We posit that this
technique can be adapted to examine an array of situations where group
differences are the key experimental variable. <br />&mdash;
differences are the key experimental variable. <br>&mdash;
<a href="https://papers.nips.cc/paper/5855-a-reduced-dimension-fmri-shared-response-model.pdf">
Chen et al, NIPS, 2015</a>
</blockquote>
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6 changes: 3 additions & 3 deletions content/pages/publications.html
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<html>
<head>
<title>Publications</title>
<meta name="save_as" content="publications.html" />
<meta name="url" content="publications.html" />
<meta name="save_as" content="publications.html">
<meta name="url" content="publications.html">
</head>
<body>
<p>This page lists publications that either describe data provided by the
Expand All @@ -11,7 +11,7 @@
<form action='javascript:void(0)'
onSubmit='filterForm(document.getElementById("publications_filter_field").value);'
onReset='filterForm("")'>
<input id='publications_filter_field' type="text" placeholder="Filter table for..." aria-label="Filter table for..." /><button title='Filter Table' type="submit"><span class="icon-filter"></span></button>
<input id='publications_filter_field' type="text" placeholder="Filter table for..." aria-label="Filter table for..."><button title='Filter Table' type="submit"><span class="icon-filter"></span></button>
<input type="reset" value="Reset">
</form>
<noscript>
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6 changes: 3 additions & 3 deletions theme/templates/base.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
{% block meta %}
<meta name="author" content="{{ AUTHOR }}" />
<meta name="author" content="{{ AUTHOR }}">
{% endblock %}
<title>{{ SITENAME }}{% block title %}{% endblock %}</title>
<link rel="license" hreflang="en" href="/copyright.html" />
<link rel="license" hreflang="en" href="/copyright.html">

<!-- favicons were once a simple race, but they dug too greedily and too deep... -->
<link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon.png?v=5">
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<meta name="msapplication-TileColor" content="#da532c">
<meta name="theme-color" content="#ffffff">

<link rel="stylesheet" type="text/css" href="/theme/css/style.css" />
<link rel="stylesheet" type="text/css" href="/theme/css/style.css">
{% block extra_headers %}{% endblock %}
</head>
<body>
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2 changes: 1 addition & 1 deletion theme/templates/index.html
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Expand Up @@ -12,7 +12,7 @@
<div id="header">
<h2>The home of a diverse and extensive collection of data and
studies on our favorite shrimping, cross-country running,
international ping-pong champion: <br /><em>Forrest Gump</em>
international ping-pong champion: <br><em>Forrest Gump</em>
</h2>
</div>
{% endblock topcontent %}
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