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Brings 20220414-fs-source branch up to date with ReproNim/master #1

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merged 282 commits into from
Oct 23, 2023

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pdlloyd
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@pdlloyd pdlloyd commented Oct 21, 2023

This removes the merge conflicts that were preventing @pwighton's 20220414-fs-source branch from merging with the master branch of https://github.com/ReproNim/neurodocker. This will hopefully resolve ReproNim#445

dependabot bot and others added 28 commits September 4, 2023 18:53
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
…ns/actions/checkout-4

Bump actions/checkout from 3 to 4
[FIX] install the proper dependencies for doc build
adding example for dealing with FSL license question in a non-interactive session
added description for interactive containers as discussed here:
ReproNim#475
Co-authored-by: Remi Gau <remi_gau@hotmail.com>
Mention --yes option here as well and refer to examples
Include FSL license auto-yes example
fix code formatting
[ENH] implement more recent mrtrix version
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
…ns/actions/checkout-4

Bump actions/checkout from 3 to 4
added fsl "6.0.7.1"
Updating master branch reflect ReproNim HEAD
@pwighton
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Thanks @pdlloyd!

@pwighton pwighton merged commit 3f586d0 into pwighton:20220414-fs-source Oct 23, 2023
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