Run all checks #1036
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name: Run all checks | |
on: | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
inputs: | |
ref: | |
description: 'The git ref to build the package for' | |
required: false | |
default: '' | |
type: string | |
use_lkg: | |
description: 'Whether to use the last known good versions of dependencies' | |
required: false | |
default: True | |
type: boolean | |
# nightly | |
schedule: | |
- cron: '0 0 * * *' | |
# Only run once per PR, canceling any previous runs | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
# Precompute the ref if the workflow was triggered by a workflow dispatch rather than copying this logic repeatedly | |
env: | |
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
# we want to use the LKG if that is explicitly requested, or if we're in a PR, but not a nightly run | |
# the final `|| ''` is because env vars are always converted to strings and the string 'false' is truthy (!!) | |
# (see https://github.com/orgs/community/discussions/25645) | |
use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' || ''}} | |
jobs: | |
eval: | |
name: Evaluate changes | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
fetch-depth: 2 | |
# We want to enforce the following rules for PRs: | |
# * if all modifications are to README.md | |
# no testing is needed | |
# * if there are modifications to docs/* or to any code | |
# then docs need to be built to verify consistency | |
# * if there are modifications to notebooks/* or to any code | |
# then notebooks need to be run to verify consistency | |
# * for any code changes (or changes to metadata files) | |
# linting and testing should be run | |
# For a PR build, HEAD will be the merge commit, and we want to diff against the base branch, | |
# which will be the first parent: HEAD^ | |
# (For non-PR changes, we will always perform all CI tasks) | |
# Note that GitHub Actions provides path filters, but they operate at the workflow level, not the job level | |
- name: Determine type of code change | |
run: | | |
if ($env:GITHUB_EVENT_NAME -eq 'pull_request') { | |
$editedFiles = git diff HEAD^ --name-only | |
$editedFiles # echo edited files to enable easier debugging | |
$codeChanges = $false | |
$docChanges = $false | |
$nbChanges = $false | |
$changeType = "none" | |
foreach ($file in $editedFiles) { | |
switch -Wildcard ($file) { | |
"README.md" { Continue } | |
".gitignore" { Continue } | |
"econml/_version.py" { Continue } | |
"prototypes/*" { Continue } | |
"images/*" { Continue } | |
"doc/*" { $docChanges = $true; Continue } | |
"notebooks/*" { $nbChanges = $true; Continue } | |
default { $codeChanges = $true; Continue } | |
} | |
} | |
} | |
echo "buildDocs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($docChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT | |
echo "buildNbs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($nbChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT | |
echo "testCode=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or $codeChanges)" >> $env:GITHUB_OUTPUT | |
shell: pwsh | |
id: eval | |
outputs: | |
buildDocs: ${{ steps.eval.outputs.buildDocs }} | |
buildNbs: ${{ steps.eval.outputs.buildNbs }} | |
testCode: ${{ steps.eval.outputs.testCode }} | |
lint: | |
name: Lint code | |
needs: [eval] | |
if: ${{ needs.eval.outputs.testCode == 'True' }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.9' | |
- name: Ensure latest pip and setuptools | |
run: python -m pip install --upgrade pip && pip install --upgrade setuptools | |
- name: Run Ruff | |
run: 'pip install ruff && ruff check' | |
notebooks: | |
name: Run notebooks | |
needs: [eval] | |
if: ${{ needs.eval.outputs.buildNbs == 'True' }} | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
kind: [except-customer-scenarios, customer-scenarios] | |
include: | |
- kind: "except-customer-scenarios" | |
extras: "[tf,plt,ray]" | |
pattern: "(?!CustomerScenarios)" | |
install_graphviz: true | |
version: '3.8' # no supported version of tensorflow for 3.9 | |
- kind: "customer-scenarios" | |
extras: "[plt,dowhy]" | |
pattern: "CustomerScenarios" | |
version: '3.9' | |
install_graphviz: false | |
fail-fast: false | |
env: | |
id_string: ${{ matrix.kind }}-${{ matrix.version }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.version }} | |
- name: Install uv | |
# check if we're running on windows | |
run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
- name: Install graphviz | |
run: sudo apt-get -yq install graphviz | |
if: ${{ matrix.install_graphviz }} | |
# Add verbose flag to pip installation if in debug mode | |
- name: Install econml | |
run: uv pip install --system -e .${{ matrix.extras }} ${{ fromJSON('["","-v"]')[runner.debug] }} ${{ env.use_lkg && '-r lkg-notebook.txt' }} | |
# Install notebook requirements (if not already done as part of lkg) | |
- name: Install notebook requirements | |
run: uv pip install --system jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm | |
if: ${{ !env.use_lkg }} | |
- name: Save installed packages | |
run: pip freeze --exclude-editable > notebooks-${{ env.id_string }}-requirements.txt | |
- name: Upload installed packages | |
uses: actions/upload-artifact@v4 | |
with: | |
name: requirements-${{ env.id_string }} | |
path: notebooks-${{ env.id_string }}-requirements.txt | |
- name: Install pytest | |
run: uv pip install --system pytest pytest-xdist pytest-cov coverage[toml] | |
- name: Run notebook tests | |
run: python -m pytest | |
id: run_tests | |
env: | |
PYTEST_ADDOPTS: '-m "notebook"' | |
NOTEBOOK_DIR_PATTERN: ${{ matrix.pattern }} | |
COVERAGE_PROCESS_START: 'pyproject.toml' | |
- name: Make coverage filename unique | |
run: mv .coverage .coverage.${{ env.id_string }} | |
# Run whether or not the tests passed, but only if they ran at all | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
- name: Upload coverage report | |
uses: actions/upload-artifact@v4 | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
with: | |
name: coverage-${{ env.id_string }} | |
path: .coverage.${{ env.id_string }} | |
# need to include hidden files since path starts with . | |
include-hidden-files: true | |
- name: Make test XML filename unique | |
run: mv junit/test-results.xml ${{ env.id_string }}-test-results.xml | |
# Run whether or not the tests passed, but only if they ran at all | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
- name: Upload test XML files | |
uses: actions/upload-artifact@v4 | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
with: | |
name: tests-${{ env.id_string }} | |
path: ${{ env.id_string }}-test-results.xml | |
- name: Upload notebook outputs | |
uses: actions/upload-artifact@v4 | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
with: | |
name: notebooks-${{ env.id_string }} | |
path: notebooks/output/ | |
tests: | |
name: "Run tests" | |
needs: [eval] | |
if: ${{ needs.eval.outputs.testCode == 'True' }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
kind: [serial, other, dml, main, treatment, ray] | |
exclude: | |
# Serial tests fail randomly on mac sometimes, so we don't run them there | |
- os: macos-latest | |
kind: serial | |
# Mac ARM doesn't support tensorflow versions compatible with python 3.8 | |
- os: macos-latest | |
python-version: '3.8' | |
# Ray tests run out of memory on Windows | |
- os: windows-latest | |
kind: ray | |
# Ray doesn't currently support Python 3.12 | |
- python-version: '3.12' | |
kind: ray | |
# Assign the correct package and testing options for each kind of test | |
include: | |
- kind: serial | |
opts: '-m "serial and not ray" -n 1' | |
extras: "" | |
- kind: other | |
opts: '-m "cate_api and not ray" -n auto' | |
extras: "[tf,plt]" | |
- kind: dml | |
opts: '-m "dml and not ray"' | |
extras: "[tf,plt]" | |
- kind: main | |
opts: '-m "not (notebook or automl or dml or serial or cate_api or treatment_featurization or ray)" -n 2' | |
extras: "[tf,plt,dowhy]" | |
- kind: treatment | |
opts: '-m "treatment_featurization and not ray" -n auto' | |
extras: "[tf,plt]" | |
- kind: ray | |
opts: '-m "ray"' | |
extras: "[ray]" | |
fail-fast: false | |
runs-on: ${{ matrix.os }} | |
env: | |
id_string: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.kind }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install libomp | |
# lightgbm needs libomp on mac | |
run: brew install libomp | |
if: matrix.os == 'macos-latest' | |
- name: Install uv | |
# check if we're running on windows | |
run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
# Add verbose flag to pip installation if in debug mode | |
- name: Install econml | |
run: uv pip install --system -e .${{ matrix.extras }} ${{ fromJSON('["","-v"]')[runner.debug] }} ${{ env.use_lkg && '-r lkg.txt' }} | |
- name: Save installed packages | |
run: pip freeze --exclude-editable > tests-${{ env.id_string }}-requirements.txt | |
- name: Upload installed packages | |
uses: actions/upload-artifact@v4 | |
with: | |
name: requirements-${{ env.id_string }} | |
path: tests-${{ env.id_string }}-requirements.txt | |
- name: Install pytest | |
run: uv pip install --system pytest pytest-xdist pytest-cov coverage[toml] | |
- name: Run tests | |
run: python -m pytest | |
id: run_tests | |
env: | |
PYTEST_ADDOPTS: ${{ matrix.opts }} | |
COVERAGE_PROCESS_START: 'pyproject.toml' | |
- name: Make coverage filename unique | |
run: mv .coverage .coverage.${{ env.id_string }} | |
# Run whether or not the tests passed, but only if they ran at all | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
- name: Upload coverage report | |
uses: actions/upload-artifact@v4 | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
with: | |
name: coverage-${{ env.id_string }} | |
path: .coverage.${{ env.id_string }} | |
# need to include hidden files since path starts with . | |
include-hidden-files: true | |
- name: Make test XML filename unique | |
run: mv junit/test-results.xml ${{ env.id_string }}-test-results.xml | |
# Run whether or not the tests passed, but only if they ran at all | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
- name: Upload test XML files | |
uses: actions/upload-artifact@v4 | |
if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
with: | |
name: tests-${{ env.id_string }} | |
path: ${{ env.id_string }}-test-results.xml | |
store-reqs-per-env: | |
name: Store requirements for LKG updates | |
if: (success() || failure()) && (github.event_name == 'workflow_dispatch' && !inputs.use_lkg || github.event_name == 'schedule') | |
strategy: | |
matrix: | |
kind: [tests] | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
extras: ["[tf,plt,dowhy,ray]"] | |
include: | |
# explicitly add the two notebook extras | |
- kind: notebooks | |
os: ubuntu-latest | |
python-version: '3.8' | |
extras: "[tf,plt,ray]" | |
- kind: notebooks | |
os: ubuntu-latest | |
python-version: '3.9' | |
extras: "[plt,dowhy]" | |
exclude: | |
# Mac ARM doesn't support tensorflow versions compatible with python 3.8 | |
- os: macos-latest | |
python-version: '3.8' | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install uv | |
# check if we're running on windows | |
run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
- name: Install econml | |
# add all extras used by any of the individual tests, which is a superset of what's actually used anywhere | |
run: uv pip install --system -e .${{ matrix.extras }} | |
- name: Install notebook requirements | |
run: uv pip install --system jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm | |
if: matrix.kind == 'notebooks' | |
- name: Save installed packages | |
run: pip freeze --exclude-editable > lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }}.txt | |
- name: Upload installed packages | |
uses: actions/upload-artifact@v4 | |
with: | |
name: lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }} | |
path: lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }}.txt | |
coverage-report: | |
name: "Coverage report" | |
needs: [tests, notebooks] | |
if: success() || failure() | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Get coverage reports | |
uses: actions/download-artifact@v4 | |
with: | |
pattern: coverage-* | |
path: coverage | |
merge-multiple: true | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.8' | |
- name: Install coverage | |
run: pip install coverage[toml] | |
- name: Combine coverage reports | |
run: coverage combine coverage/ | |
- name: Generate coverage report | |
run: coverage report -m --format=markdown > $GITHUB_STEP_SUMMARY | |
- name: Generate coverage html --fail-under=86 | |
run: coverage html | |
- name: Upload coverage report | |
uses: actions/upload-artifact@v4 | |
with: | |
name: coverage-report | |
path: htmlcov | |
merge-artifacts: | |
name: "Merge artifacts" | |
needs: [coverage-report, tests, notebooks, store-reqs-per-env] | |
if: success() || failure() | |
strategy: | |
matrix: | |
artifact: [requirements, tests, coverage, notebooks, lkg-tests, lkg-notebooks] | |
runs-on: ubuntu-latest | |
steps: | |
- name: "Merge artifacts" | |
uses: actions/upload-artifact/merge@v4 | |
with: | |
name: ${{ matrix.artifact }} | |
pattern: "${{ matrix.artifact }}-*" | |
delete-merged: true | |
# if we are re-running a job in a subsequent attempt, some of the other artifacts may not exist in this attempt (e.g. notebooks, if only non-notebook tests failed) | |
# Unlike with plain upload-artifact, there's no way to ignore the situation where no files are found when using the v4 merge action | |
# (see https://github.com/actions/upload-artifact/issues/520), so just continue on error isntead | |
continue-on-error: true | |
generate-lkg: | |
name: "Generate updated last known good files" | |
needs: [merge-artifacts] | |
if: (success() || failure()) && (github.event_name == 'workflow_dispatch' && !inputs.use_lkg || github.event_name == 'schedule') | |
strategy: | |
matrix: | |
kind: [tests, notebooks] | |
include: | |
- kind: tests | |
output-name: lkg | |
- kind: notebooks | |
output-name: lkg-notebook | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ env.ref }} | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
- name: Download files | |
uses: actions/download-artifact@v4 | |
with: | |
name: lkg-${{ matrix.kind }} | |
path: requirements | |
- name: "Generate last known good versions" | |
run: python .github/workflows/generate_lkg.py requirements "lkg-${{ matrix.kind }}-(?P<os>[a-z]+)-(latest|[0-9.]+)-(?P<pyversion>[0-9.]+).txt" ${{ matrix.output-name }}.txt | |
- name: "Upload last known good versions" | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ${{ matrix.output-name }} | |
path: ${{ matrix.output-name }}.txt | |
merge-lkg: | |
name: "Merge last known good versions" | |
needs: [generate-lkg] | |
if: success() || failure() | |
runs-on: ubuntu-latest | |
steps: | |
- name: "Merge last known good versions" | |
uses: actions/upload-artifact/merge@v4 | |
with: | |
# can't use just "lkg" for the name since that artifact already exists and merge won't overwrite it even when delete-merged is true | |
name: lkg-files | |
pattern: "lkg*" | |
delete-merged: true | |
build: | |
name: Build package | |
needs: [eval] | |
if: ${{ needs.eval.outputs.testCode == 'True' }} | |
uses: ./.github/workflows/publish-package.yml | |
with: | |
publish: false | |
environment: test | |
# don't have access to env context here for some reason | |
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
# can't use env context here so need to duplicate expression, but these are true boolean values so don't need extra string logic | |
use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' }} | |
docs: | |
name: Build documentation | |
needs: [eval] | |
if: ${{ needs.eval.outputs.buildDocs == 'True' }} | |
uses: ./.github/workflows/publish-documentation.yml | |
with: | |
publish: false | |
environment: test | |
# don't have access to env context here for some reason | |
ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
# can't use env context here so need to duplicate expression, but these are true boolean values so don't need extra string logic | |
use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' }} | |
verify: | |
name: Verify CI checks | |
needs: [lint, notebooks, tests, build, docs] | |
if: always() | |
runs-on: ubuntu-latest | |
steps: | |
- name: At least one check failed or was cancelled | |
run: exit 1 | |
if: ${{ contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled') }} | |
- name: All checks passed | |
run: exit 0 | |
if: ${{ !(contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled')) }} |