ci: Add doctests to CI again. #1223
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python: ['3.10', '3.11', '3.12'] | |
| pip_opts: [''] | |
| numba_boundscheck: [0] | |
| include: | |
| - os: macos-latest | |
| python: '3.10' | |
| - os: windows-latest | |
| python: '3.10' | |
| - os: ubuntu-latest | |
| python: '3.10' | |
| numba_boundscheck: 1 | |
| - os: ubuntu-latest | |
| python: '3.10' | |
| pip_opts: 'numpy<2' | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python }} | |
| NUMBA_BOUNDSCHECK: ${{ matrix.numba_boundscheck }} | |
| PYTHONFAULTHANDLER: '${{ github.workspace }}/faulthandler.log' | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ci/environment.yml | |
| init-shell: >- | |
| bash | |
| cache-environment: true | |
| cache-downloads: true | |
| post-cleanup: 'all' | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| ${{ matrix.pip_opts }} | |
| - name: Install package | |
| run: | | |
| pip install -e '.[tests]' | |
| # micromamba remove numba | |
| # micromamba install -c numba numba | |
| - name: Run tests | |
| run: | | |
| SPARSE_BACKEND=Numba pytest --pyargs sparse --doctest-modules --cov-report=xml:coverage_Numba.xml -n0 -vvv | |
| SPARSE_BACKEND=Finch pytest --pyargs sparse/tests --cov-report=xml:coverage_Finch.xml -n0 -vvv | |
| SPARSE_BACKEND=MLIR pytest --pyargs sparse/mlir_backend --cov-report=xml:coverage_MLIR.xml -n0 -vvv | |
| - uses: codecov/codecov-action@v5 | |
| if: always() | |
| with: | |
| files: ./**/coverage*.xml | |
| examples: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: 'pip' | |
| - name: Build and install Sparse | |
| run: | | |
| pip install -U setuptools wheel | |
| pip install '.[finch]' scipy | |
| - name: Run examples | |
| run: | | |
| source ci/test_examples.sh | |
| notebooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: 'pip' | |
| - name: Build and install Sparse | |
| run: | | |
| pip install -e '.[notebooks]' | |
| - name: Run notebooks | |
| run: | | |
| source ci/test_notebooks.sh | |
| array_api_tests: | |
| strategy: | |
| matrix: | |
| backend: ['Numba', 'Finch'] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v4 | |
| - name: Checkout array-api-tests | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: data-apis/array-api-tests | |
| ref: '33f2d2ea2f3dd2b3ceeeb4519d55e08096184149' # Latest commit as of 2024-05-29 | |
| submodules: 'true' | |
| path: 'array-api-tests' | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: 'pip' | |
| - name: Install build and test dependencies from PyPI | |
| run: | | |
| pip install pytest-xdist -r array-api-tests/requirements.txt | |
| - name: Build and install Sparse | |
| run: | | |
| pip install '.[finch]' | |
| - name: Run the test suite | |
| env: | |
| ARRAY_API_TESTS_MODULE: sparse | |
| SPARSE_BACKEND: ${{ matrix.backend }} | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/array-api-tests | |
| pytest array_api_tests -v -c pytest.ini -n0 --max-examples=2 --derandomize --disable-deadline -o xfail_strict=True --xfails-file ${GITHUB_WORKSPACE}/ci/${{ matrix.backend }}-array-api-xfails.txt --skips-file ${GITHUB_WORKSPACE}/ci/${{ matrix.backend }}-array-api-skips.txt | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the main branch | |
| push: | |
| branches: | |
| - main | |
| - vnext | |
| pull_request: | |
| branches: | |
| - main | |
| - vnext | |
| # Also trigger on page_build, as well as release created events | |
| page_build: | |
| release: | |
| types: # This configuration does not affect the page_build event above | |
| - created |