Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Speed-up multi-index html repr + add display_values_threshold option #6400

Merged
merged 6 commits into from
Mar 29, 2022

Conversation

benbovy
Copy link
Member

@benbovy benbovy commented Mar 22, 2022

This adds PandasMultiIndexingAdapter._repr_html_ that can greatly speed-up the html repr of Xarray objects with
multi-indexes.

This optimized _repr_html_ implementation is now used for formatting the array detailed view of all multi-index coordinates in the html repr, instead of converting the full index and each levels to numpy arrays before formatting them.

import xarray as xr

ds = xr.tutorial.load_dataset("air_temperature")
da = ds["air"].stack(z=[...])

da.shape 

# (3869000,)

%timeit -n 1 -r 1 da._repr_html_()

# 9.96 ms !

This may greatly speed-up the html repr of Xarray objects with
multi-indexes

This optimized _repr_html_ is now used for formatting the array detailed
view of multi-index coordinates, instead of converting the full index /
levels to numpy arrays before formatting it.
@dcherian dcherian added the run-benchmark Run the ASV benchmark workflow label Mar 22, 2022
@max-sixty
Copy link
Collaborator

Thanks a lot @benbovy !

I hadn't realized I had dropped this from before — you're correct that the existing solution was only addressed some of the cases.

@dcherian
Copy link
Contributor

       before           after         ratio
     [f8bae597]       [ce374c9c]
-         116±3ms      4.69±0.07ms     0.04  repr.ReprMultiIndex.time_repr_html

Nice work!

xarray/core/indexing.py Outdated Show resolved Hide resolved
@benbovy benbovy changed the title Speed-up multi-index html repr Speed-up multi-index html repr + add display_values_threshold options Mar 28, 2022
@benbovy benbovy changed the title Speed-up multi-index html repr + add display_values_threshold options Speed-up multi-index html repr + add display_values_threshold option Mar 28, 2022
@benbovy
Copy link
Member Author

benbovy commented Mar 29, 2022

Ok, let's merge this (docs build fail seems unrelated).

@benbovy benbovy merged commit d8fc346 into pydata:main Mar 29, 2022
@benbovy benbovy deleted the speed-up-mindex-repr branch March 29, 2022 07:10
dcherian added a commit to dcherian/xarray that referenced this pull request Mar 29, 2022
* main: (23 commits)
  Vectorize groupby binary ops (pydata#6160)
  Speed-up multi-index html repr + add display_values_threshold option (pydata#6400)
  [pre-commit.ci] pre-commit autoupdate (pydata#6422)
  Fix concat scalar coord dtype (pydata#6418)
  use the `DaskIndexingAdapter` for `duck dask` arrays (pydata#6414)
  Weighted quantile (pydata#6059)
  upgrade `sphinx` (pydata#6415)
  Add kwarg-only breaking change to whats-new (pydata#6409)
  [pre-commit.ci] pre-commit autoupdate (pydata#6396)
  fix DataArray groupby returning a Dataset (pydata#6394)
  reindex: fix missing variable metadata (pydata#6389)
  [skip-ci] Add benchmarks for groupby math (pydata#6390)
  Fix concat with scalar coordinate (pydata#6385)
  isel: convert IndexVariable to Variable if index is dropped (pydata#6388)
  fix dataset groupby combine dataarray func (pydata#6386)
  fix concat with variable or dataarray as dim (pydata#6387)
  pydata#6367 Fix for time units checking could produce "unhashable type" error (pydata#6368)
  Explicit indexes (pydata#5692)
  Remove test_rasterio_vrt_network (pydata#6371)
  Allow write_empty_chunks to be set in Zarr encoding (pydata#6348)
  ...
dcherian added a commit to dcherian/xarray that referenced this pull request May 13, 2022
Closes #5734
Closes #4473
Closes #4498
Closes #659
Closes #2237
xref https://github.com/pangeo-data/pangeo/issues/271

Co-authored-by: Anderson Banihirwe <axbanihirwe@ualr.edu>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>
Co-authored-by: Mathias Hauser <mathause@users.noreply.github.com>
Co-authored-by: Stephan Hoyer <shoyer@google.com>

Squashed commit of the following:

commit 2e3dca8011bc26e937597ed436a39a6ca7c130d5
Merge: 3ab03ee09 c34ef8a60
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu May 12 17:49:31 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit 3ab03ee0960b15a03d68a54000a90a17ea464e8f
Merge: ad33d8512 11041bdfd
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Wed May 11 13:31:45 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit ad33d85123dc28a374b1dfee41a2a35aba4a654c
Author: dcherian <deepak@cherian.net>
Date:   Tue May 10 13:20:02 2022 -0600

    Deduplicate

commit fd20ba2d7447331bed47030fa80bf20735835a1f
Author: dcherian <deepak@cherian.net>
Date:   Tue May 10 11:54:00 2022 -0600

    Update whats-new

commit 67cda8a552c647795a5480ced99d4f8f14cb3518
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Mon May 9 22:16:50 2022 +0200

    Ignore typing when flox is not available

commit d711d5804efc9c29a2960d765675550cf4d92c18
Merge: 33f70dae4 4b7683112
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Mon May 9 20:48:20 2022 +0200

    Merge branch 'main' into pr/5734

commit 33f70dae4342897577c2bf98e7e8bddc8283585a
Merge: c38ef7868 4a384fd06
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 23:21:23 2022 +0200

    Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734

commit c38ef78687a63ad6d7211c0a9a70f1fdd25ab528
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 23:21:09 2022 +0200

    Update resample.py

commit 4a384fd06786d4dce52538a991d609b95670753f
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Thu May 5 21:13:23 2022 +0000

    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci

commit 2ee1de40d4b0e343ff120c744a43e45ef2508ed5
Merge: 32828090d 4f7ef6d1c
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 23:11:21 2022 +0200

    Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734

commit 32828090d0c031e3ad0b13ff7e04832f61265749
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 23:09:01 2022 +0200

    Copy/paste instead of a for loop

    Hopefully mypy will be satisfied

commit 4f7ef6d1c94fb431b335d07e6cfd092d3b1a9957
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Thu May 5 20:36:23 2022 +0000

    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci

commit 1ac3281242c0a9d73e579c0aa14eb481e513dd63
Merge: 444feee5c 6fbeb1310
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 22:34:09 2022 +0200

    Merge branch 'main' into pr/5734

commit 444feee5c0176390f4e0bf95a32decf179e5d9f2
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 22:32:19 2022 +0200

    Try subclassing to ResampleBase-classes

    Resample assumes having self._group_dim but that was never defined earlier, mypy should complain about this if the class was typed.

commit ac49bfa5307aebfb849597e5049e24a725df17ee
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 20:55:45 2022 +0200

    Update resample.py

commit 4705b6cdc7e6d4c5f6e7c02317b605d172d45242
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 20:46:49 2022 +0200

    Update _reductions.py

commit 687beacc4696008489b00a68335f674b1b0719ba
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 20:19:53 2022 +0200

    Update _reductions.py

commit 7a58590561fef1fc1714c71443b61b4553bdfded
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Thu May 5 20:02:30 2022 +0200

    Test adding back dummy methods.

commit 7869ad5ef595ffaeb19e6c3f977a3603db51356d
Merge: 36c206ede 126051f2b
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Wed May 4 21:50:36 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit 36c206ede789c1567f6d4fd7baa0746c6877aae1
Author: dcherian <deepak@cherian.net>
Date:   Wed May 4 09:15:40 2022 -0600

    Clean up resampling.

    Add Resample._flox_reduce.
    Change inheritance order to make things work.

commit b2b3001255bf440e9f2907297d091ae4b02dbc28
Author: dcherian <deepak@cherian.net>
Date:   Tue May 3 09:58:01 2022 -0600

    [skip-ci] Fix whats-new.

commit 6902de318e15f88d9dd33479a2e061ad318c3ef0
Author: dcherian <deepak@cherian.net>
Date:   Tue May 3 09:18:25 2022 -0600

    Better defaults for resample

commit 7dab7308d330e1ca833038f89479959fbff2426e
Author: dcherian <deepak@cherian.net>
Date:   Tue May 3 09:13:24 2022 -0600

    [skip-ci] add whats-new

commit 7d9b4709353e1562b44cd299a5e8b62913bd9ea1
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Tue May 3 08:50:22 2022 -0600

    Update ci/requirements/min-all-deps.yml

commit 2d1de0fcd08fe135bb721ee8382a0d54282529f2
Author: dcherian <deepak@cherian.net>
Date:   Mon May 2 14:38:06 2022 -0600

    Add flox to min_all_deps

commit 5337bd4160d5c73cf145c4710b40e2ece8aef737
Merge: 5583e342c cf8f1d6fc
Author: dcherian <deepak@cherian.net>
Date:   Mon May 2 14:28:09 2022 -0600

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      [pre-commit.ci] pre-commit autoupdate (#6562)
      Run mypy tests (but always pass) (#6557)
      Update issue template to include a checklist (#6522)
      Remove duplicate tests, v3 (#6550)
      Skip mypy tests in CI (#6552)
      Direct usage questions to GH discussions (#6539)
      Revert "Attempt to improve CI caching (#6534)" (#6543)
      Revert "Remove duplicate tests (#6536)" (#6540)
      Remove duplicate tests (#6536)
      Add a slighly cheesy contributors panel to readme (#6520)
      Fix doctest & mypy CI jobs (#6535)
      Attempt to improve CI caching (#6534)
      Attempt to consolidate tests in CI (#6533)
      Restrict annotations to a single run in GHA (#6532)
      Fix some mypy issues (#6531)
      Pin version of black in pre-commit blackdoc (#6492)
      Scale numfocus image in readme (#6519)
      Use new importlib.metadata.entry_points interface where available. (#6516)
      Add a badge for binder (#6518)
      Bump codecov/codecov-action from 3.0.0 to 3.1.0 (#6509)

commit 5583e342cc187d6f14bf43cc36c53d9916345e58
Author: dcherian <deepak@cherian.net>
Date:   Mon Apr 25 20:50:03 2022 -0600

    Set default to "split-reduce" to reduce surprises

commit eae37e2fd629abe2558f230b2f496b49cfd4c8a6
Author: dcherian <deepak@cherian.net>
Date:   Mon Apr 25 20:45:44 2022 -0600

    Properly support numeric_only

commit fcef26fe30cde5f1e5b41b94d1be0f65cb66fc6d
Merge: 3a7052e66 d0a412a0e
Author: dcherian <deepak@cherian.net>
Date:   Sat Apr 23 18:48:41 2022 -0600

    Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies

    * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
      Update ci/requirements/environment-windows.yml

commit 3a7052e66f3d287247759733a29a7118ea5c4f22
Author: dcherian <deepak@cherian.net>
Date:   Sat Apr 23 18:47:30 2022 -0600

    Support numeric_only

commit 56272775242b96cd5cbe416184b30aa0b8b2f1e7
Merge: d61377964 33cdabd26
Author: dcherian <deepak@cherian.net>
Date:   Sat Apr 23 18:26:23 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

    * main: (26 commits)
      Remove xarray.ufuncs (#6491)
      Convert readme to markdown (#6495)
      HTML repr fix for Furo Sphinx theme (#6501)
      Restrict stalebot on projects & milestones (#6498)
      Ensure datetime-like variables are left unmodified by `decode_cf_variable` (#6489)
      Add link to xarray binder to readme (#6494)
      Add details section to issue template (#6486)
      [skip-ci] Redirect raster analysis questions to rioxarray (#6455)
      Accessing the Exception message via e.args[0] (#6451)
      Add support in the "zarr" backend for reading NCZarr data (#6420)
      Propagate MultiIndex variables in broadcast (#6477)
      Fix whatnsew build error (#6480)
      allow other and drop arguments in where (gh#6466) (#6467)
      [pre-commit.ci] pre-commit autoupdate (#6472)
      Fix `xr.where(..., keep_attrs=True)` bug (#6461)
      Fix `Number` import (#6474)
      Support **kwargs form in `.chunk()` (#6471)
      Bump actions/upload-artifact from 2 to 3 (#6468)
      Bump codecov/codecov-action from 2.1.0 to 3.0.0 (#6470)
      Bump actions/download-artifact from 2 to 3 (#6469)
      ...

commit d0a412a0e7fdfdc2f8cc02dfcf6279ededfea586
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Wed Apr 13 11:36:40 2022 -0600

    Update ci/requirements/environment-windows.yml

commit d2510c028802cce4a1aab6b0694b3b007dc335ad
Merge: d61377964 b4c943e80
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Wed Apr 13 11:36:10 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit d613779646d8ec77f852eb0558fbdc3bb474874b
Author: dcherian <deepak@cherian.net>
Date:   Sun Apr 10 08:41:09 2022 -0600

    fix

commit da31c4f8771bf15d7b608f5cdf47c872aa457cf5
Merge: 3580ae3ca 158314abf
Author: dcherian <deepak@cherian.net>
Date:   Sun Apr 10 08:32:33 2022 -0600

    Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies

    * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
      [pre-commit.ci] auto fixes from pre-commit.com hooks

commit 3580ae3ca1b7e93b9ec83636b7d9b5ab678e6bd9
Author: dcherian <deepak@cherian.net>
Date:   Sun Apr 10 08:31:20 2022 -0600

    fix

commit 158314abfcdfbfc2c69bc174f7ae1b6acb78f106
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Sun Apr 10 14:31:00 2022 +0000

    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci

commit 628406c8cab3021eff84ef679bf47b56dba42ec9
Merge: 4dd9e661d 812ce3339
Author: dcherian <deepak@cherian.net>
Date:   Sun Apr 10 08:29:30 2022 -0600

    Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies

    * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
      [skip-ci] Apply suggestions from code review

commit 812ce333957224c8193a1ef53de8fc99ff600439
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Sun Apr 10 08:29:24 2022 -0600

    [skip-ci] Apply suggestions from code review

    Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>

commit 4dd9e661def401105589d42bfd14a7bc3e48eb3c
Author: dcherian <deepak@cherian.net>
Date:   Sun Apr 10 08:27:09 2022 -0600

    Update envs

commit 9d4ee11bb6be58b00a382e6af7e7f6b781d3e80d
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Sun Apr 10 08:25:20 2022 -0600

    [skip-ci] Apply suggestions from code review

    Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>

commit c176f8d21faa94929db1ee1609e9edc7a9556e41
Author: dcherian <deepak@cherian.net>
Date:   Wed Mar 30 15:52:26 2022 +0530

    Test cleanup

commit fd6aa17743cb360c6587309fa92ac0fd290a590b
Author: dcherian <deepak@cherian.net>
Date:   Wed Mar 30 13:23:34 2022 +0530

    fix

commit 87f94ba854277f65641b585b83b6edd5cbdc4756
Merge: 1a918021a facafac35
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Apr 7 12:09:53 2022 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit 1a918021abb66033dc18498f50ce52bf4beae8e6
Merge: 2694dbea6 2e93d549d
Author: dcherian <deepak@cherian.net>
Date:   Tue Mar 29 19:44:12 2022 +0530

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

    * main: (23 commits)
      Vectorize groupby binary ops (#6160)
      Speed-up multi-index html repr + add display_values_threshold option (#6400)
      [pre-commit.ci] pre-commit autoupdate (#6422)
      Fix concat scalar coord dtype (#6418)
      use the `DaskIndexingAdapter` for `duck dask` arrays (#6414)
      Weighted quantile (#6059)
      upgrade `sphinx` (#6415)
      Add kwarg-only breaking change to whats-new (#6409)
      [pre-commit.ci] pre-commit autoupdate (#6396)
      fix DataArray groupby returning a Dataset (#6394)
      reindex: fix missing variable metadata (#6389)
      [skip-ci] Add benchmarks for groupby math (#6390)
      Fix concat with scalar coordinate (#6385)
      isel: convert IndexVariable to Variable if index is dropped (#6388)
      fix dataset groupby combine dataarray func (#6386)
      fix concat with variable or dataarray as dim (#6387)
      #6367 Fix for time units checking could produce "unhashable type" error (#6368)
      Explicit indexes (#5692)
      Remove test_rasterio_vrt_network (#6371)
      Allow write_empty_chunks to be set in Zarr encoding (#6348)
      ...

commit 2694dbea60310d83a02e91727c1de71f0eec4ec6
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 11:10:49 2022 +0530

    Test flox kwargs

commit e4125831e4c86df4752666bf27344fce99c77b02
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 11:10:30 2022 +0530

    Fix.

commit 705b3f00e001b93e5531b7801c48bbe98a4ffba1
Merge: 26d85d526 d535a3bf4
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 09:52:51 2022 +0530

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Run pyupgrade on core/groupby (#6351)

commit 26d85d5260a38e00f903e689b3819d51fb29f689
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 09:43:45 2022 +0530

    loooser test

commit a1769baf158629e84b6258069a22904de8f37fc4
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 09:34:58 2022 +0530

    polish

commit 94bcb32de46a152031b0da048d164608f7aa77c4
Merge: 62474a825 229dad93e
Author: dcherian <deepak@cherian.net>
Date:   Sun Mar 13 09:27:55 2022 +0530

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

    * main:
      Generate reductions for DataArray, Dataset, GroupBy and Resample (#5950)
      explicitly install `ipython_genutils` (#6350)

commit 62474a825edcd04567589d86db5f62a2b5ba5ec2
Merge: e348c7601 434db03e2
Author: dcherian <deepak@cherian.net>
Date:   Thu Mar 10 10:12:59 2022 -0700

    Merge branch 'generate-reductions-class' into groupby-aggs-using-numpy-groupies

    * generate-reductions-class: (31 commits)
      polish
      update _reductions
      Fixes
      Apply suggestions from code review
      Fix path
      manual tweaks to make ci happy
      Update _reductions.py
      Write to file using open() instead.
      force keyword args after dim
      Annotate some reduction tests.
      Update xarray/util/generate_reductions.py
      Update xarray/util/generate_reductions.py
      add doctests
      more reduce
      another reduce
      one more reduce
      more reduce edits
      make reduce args consistent
      updates
      [pre-commit.ci] auto fixes from pre-commit.com hooks
      ...

commit 434db03e2f0d8e2c30b991c0866b80eb46348621
Author: dcherian <deepak@cherian.net>
Date:   Thu Mar 10 09:47:58 2022 -0700

    polish

commit e348c76012f7d33cdf84ece5ed00ddc6b59d5cf8
Merge: 3f3a197c8 d293f50f9
Author: dcherian <deepak@cherian.net>
Date:   Wed Mar 9 09:43:30 2022 -0700

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

    * main: (68 commits)
      Bump actions/setup-python from 2 to 3 (#6338)
      Bump actions/checkout from 2 to 3 (#6337)
      In documentation on adding a new backend, add missing import and tweak headings (#6330)
      Lengthen underline, correct spelling, and reword (#6326)
      quantile: use skipna=None (#6303)
      New whatsnew section
      v2022.03.0 release notes (#6319)
      fix typos (using codespell) (#6316)
      Add General issue template (#6314)
      Disable CI runs on forks (#6315)
      Enable running sphinx-build on Windows (#6237)
      Fix class attributes versus init parameters (#6312)
      On Windows, enable successful test of opening a dataset containing a cftime index (#6305)
      from_dict: doctest (#6302)
      Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307)
      Amended docs on how to add a new backend (#6292)
      Adding the new wrapper gsw-xarray (#6294)
      Amended docstring to reflect the actual behaviour of Dataset.map (#6232)
      Align language def in bugreport.yml with schema (#6290)
      Move Zarr up in io.rst (#6289)
      ...

commit d5f627cf67204b78957a3bbc6147c455e54d080b
Author: dcherian <deepak@cherian.net>
Date:   Tue Mar 8 17:48:00 2022 -0700

    update _reductions

commit ebe9985a328ca26ecc008719998d597d350c97de
Merge: 1fcd0808d d293f50f9
Author: dcherian <deepak@cherian.net>
Date:   Tue Mar 8 17:44:58 2022 -0700

    Merge branch 'main' into generate-reductions-class

    * main: (71 commits)
      Bump actions/setup-python from 2 to 3 (#6338)
      Bump actions/checkout from 2 to 3 (#6337)
      In documentation on adding a new backend, add missing import and tweak headings (#6330)
      Lengthen underline, correct spelling, and reword (#6326)
      quantile: use skipna=None (#6303)
      New whatsnew section
      v2022.03.0 release notes (#6319)
      fix typos (using codespell) (#6316)
      Add General issue template (#6314)
      Disable CI runs on forks (#6315)
      Enable running sphinx-build on Windows (#6237)
      Fix class attributes versus init parameters (#6312)
      On Windows, enable successful test of opening a dataset containing a cftime index (#6305)
      from_dict: doctest (#6302)
      Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307)
      Amended docs on how to add a new backend (#6292)
      Adding the new wrapper gsw-xarray (#6294)
      Amended docstring to reflect the actual behaviour of Dataset.map (#6232)
      Align language def in bugreport.yml with schema (#6290)
      Move Zarr up in io.rst (#6289)
      ...

commit 1fcd0808d3f925ecd5bb4f03c94d70136a332487
Author: dcherian <deepak@cherian.net>
Date:   Tue Mar 8 16:59:43 2022 -0700

    Fixes

commit 9799d87f1e45f2e20a55bab13af63f2d895666ee
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Tue Mar 8 16:57:55 2022 -0700

    Apply suggestions from code review

    Co-authored-by: Stephan Hoyer <shoyer@google.com>

commit 7b34077c1355d006155abf3cdb5bc289caae96a9
Author: dcherian <deepak@cherian.net>
Date:   Wed Feb 16 09:50:49 2022 -0700

    Fix path

commit cd51a15c3a779a2e11c47677887ba818e3b3162a
Merge: 8336c53c3 18703bafe
Author: dcherian <deepak@cherian.net>
Date:   Wed Feb 16 09:46:04 2022 -0700

    Merge branch 'main' into generate-reductions-class

    * main: (32 commits)
      Small typing fix (#6159)
      Drop support for python 3.7 (#5892)
      _season_from_months can now handle np.nan (#5876)
      Use base ImportError not MoudleNotFoundError when trying to see if the (#6154)
      Remove numpy from mypy pre-commit (#6151)
      Change concat dims to be Hashable (#6121)
      Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#6147)
      Remove registration of pandas datetime converter in plotting (#6109)
      Remove pd.Panel checks (#6145)
      Remove paren from DataArray.from_dict docstring (#6140)
      Revert "Deprecate bool(ds) (#6126)" (#6141)
      remove paren from data that is fed to 1D DataArray (#6139)
      Check for just `...`, rather than `[...]` in `da.stack` (#6132)
      DOC: Add "auto" to dataarray `chunk` method (#6068)
      TST: check datetime converter is Matplotlibs (#6128)
      New algorithm for forward filling (#6118)
      Limit and format number of displayed dimensions in repr (#5662)
      Add labels to dataset diagram (#6076)
      Deprecate bool(ds) (#6126)
      Revert "disable pytest-xdist (to check CI failure)" (#6127)
      ...

commit 3f3a197c83867cca5545b1032ed1b5312d9ab51b
Merge: c157fca5f 4c865d607
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Jan 13 15:07:31 2022 -0700

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit c157fca5f9b104be66a335e4190e853400ff7ce7
Merge: 2c2e7dcd1 bc28eda79
Author: dcherian <deepak@cherian.net>
Date:   Wed Jan 12 17:02:49 2022 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Add tests for groupby math (#6137)

commit 2c2e7dcd164661601595071cafd5b8e6a00bcb10
Merge: 41e43fe22 18703bafe
Author: dcherian <deepak@cherian.net>
Date:   Wed Jan 12 11:18:24 2022 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main: (23 commits)
      Small typing fix (#6159)
      Drop support for python 3.7 (#5892)
      _season_from_months can now handle np.nan (#5876)
      Use base ImportError not MoudleNotFoundError when trying to see if the (#6154)
      Remove numpy from mypy pre-commit (#6151)
      Change concat dims to be Hashable (#6121)
      Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#6147)
      Remove registration of pandas datetime converter in plotting (#6109)
      Remove pd.Panel checks (#6145)
      Remove paren from DataArray.from_dict docstring (#6140)
      Revert "Deprecate bool(ds) (#6126)" (#6141)
      remove paren from data that is fed to 1D DataArray (#6139)
      Check for just `...`, rather than `[...]` in `da.stack` (#6132)
      DOC: Add "auto" to dataarray `chunk` method (#6068)
      TST: check datetime converter is Matplotlibs (#6128)
      New algorithm for forward filling (#6118)
      Limit and format number of displayed dimensions in repr (#5662)
      Add labels to dataset diagram (#6076)
      Deprecate bool(ds) (#6126)
      Revert "disable pytest-xdist (to check CI failure)" (#6127)
      ...

commit 41e43fe22e39179310032b7b9927e094721e332f
Author: dcherian <deepak@cherian.net>
Date:   Wed Dec 29 17:08:38 2021 -0700

    fix tests

commit 70266e176b60763dc84dc8c6852039014c0032c6
Author: dcherian <deepak@cherian.net>
Date:   Wed Dec 29 11:30:34 2021 -0700

    fix tests

commit 4fb17b14d7e603abd8c16a2f68d0dfbf5272ca8b
Merge: bdb999fa4 2cb95a82b
Author: dcherian <deepak@cherian.net>
Date:   Wed Dec 29 09:48:28 2021 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Replace markdown issue templates with issue forms (#6119)
      Remove lock kwarg (#5912)
      Remove pre-commit GHA workflow (#6120)
      is_dask_collection: micro optimization (#6107)
      Revert "Single matplotlib import (#5794)" (#6064)
      Add support for cross product (#5365)
      assert ds errors in test_backends (#6122)
      assert ds errors in test_dataset.py (#6123)

commit bdb999fa4d564148bfd669d8f91c4c509443cb9a
Author: dcherian <deepak@cherian.net>
Date:   Wed Dec 29 09:47:59 2021 -0700

    fix tests

commit e1ba8a2affa270b72b28812db8d53eebb32e3d29
Author: dcherian <deepak@cherian.net>
Date:   Tue Dec 28 11:27:29 2021 -0700

    use_numpy_groupies → use_flox

commit ad6b5bcb5a1817933f9d1e360a5749c9812ccaf8
Merge: 1875fd20a 5d30f96e9
Author: dcherian <deepak@cherian.net>
Date:   Tue Dec 28 11:23:49 2021 -0700

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

    * main:
      [pre-commit.ci] pre-commit autoupdate (#6115)
      Make CI pass by limiting dask version (#6111)
      Fix mypy precommit (#6110)
      [pre-commit.ci] pre-commit autoupdate (#6088)
      Add type definitions in prep for #6086 (#6090)
      Replace distutils.version with packaging.version (#6096)
      Attempt datetime coding using cftime when pandas fails (#6049)
      fix tests for h5netcdf v0.12 (#6097)
      disable pytest-xdist (to check CI failure) (#6077)
      cftime: 'gregorian' -> 'standard' [test-upstream] (#6082)
      Add release note skeleton for 0.21 (#6061)

commit 8336c53c334a1bec8e6a1fc8ab7448784492d6e2
Merge: 74064b957 3960ea3ba
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Mon Dec 27 08:01:05 2021 +0100

    Merge branch 'main' into pr/5950

commit 74064b957cb7c5d0dacec9708d17126fa11886bd
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 23:03:05 2021 +0100

    manual tweaks to make ci happy

commit 16372a55080c7abcd513ee60fe776e503fb568de
Merge: b78df18bd b40678934
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 22:49:20 2021 +0100

    Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950

commit b78df18bd11c496a4d5666c6972fb5d2f86e29d3
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 22:49:07 2021 +0100

    Update _reductions.py

commit bc55db33e63b10ef01e7c12518fcd7731e6d7d96
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 22:48:57 2021 +0100

    Write to file using open() instead.

commit 3dc94ae47165616878023b56a02b731549f920db
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 21:42:00 2021 +0100

    force keyword args after dim

commit 66151f62098818c6448213a906691cd4d1c1f026
Merge: cd8a898d5 dbc02d4e5
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Tue Dec 21 21:38:06 2021 +0100

    Merge branch 'main' into pr/5950

commit 1875fd20a46d0058cd83b2e3a56f4633d6b5853e
Merge: 638d98a70 dbc02d4e5
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Dec 16 07:21:47 2021 -0700

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit b4067893470e7badd5bfa90f0dbb43eeac4c89f8
Merge: 45feeaba8 5db404659
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 21:53:08 2021 -0700

    Merge remote-tracking branch 'upstream/main' into generate-reductions-class

    * upstream/main:
      Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020)
      [pre-commit.ci] pre-commit autoupdate (#6014)

commit 45feeaba8f3f19c8740da061a33839c5b2cf2ece
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 21:52:06 2021 -0700

    Annotate some reduction tests.

commit 638d98a703ab53ab1d1e0ead58a425b30c712e73
Merge: 3c51b1a3e 5db404659
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 21:42:56 2021 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020)
      [pre-commit.ci] pre-commit autoupdate (#6014)
      [pre-commit.ci] pre-commit autoupdate (#5990)
      Use set_options for asv bottleneck tests (#5986)
      Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (#5959)

commit 2a1b12faf658bcd0079a33fe2d8bac4bc910d8e7
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Thu Nov 25 21:41:21 2021 -0700

    Update xarray/util/generate_reductions.py

    Co-authored-by: Mathias Hauser <mathause@users.noreply.github.com>

commit 3c51b1a3ef4f6ab285886c478070334284905353
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 21:35:59 2021 -0700

    Squash merge #5950

    Squashed commit of the following:

    commit 6916fa7debfe4ca5c5ce9796fe5fe3243d6c4d2a
    Author: Deepak Cherian <dcherian@users.noreply.github.com>
    Date:   Mon Nov 22 11:16:43 2021 -0700

        Update xarray/util/generate_reductions.py

        Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>

    commit cd8a898d5b003ea28ec8f3feacb56d76b6dc1096
    Author: dcherian <deepak@cherian.net>
    Date:   Sat Nov 20 14:37:17 2021 -0700

        add doctests

    commit 19d82cddf0a4ac30811803de9f7e70a881d52ea0
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 22:00:29 2021 +0100

        more reduce

    commit 0f94bec2953aa3e7eadd0c4efc25cd6111b7e663
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 20:48:27 2021 +0100

        another reduce

    commit be33560a14ac4b9379e5d0ff4f340cfbd6d552f1
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 20:28:39 2021 +0100

        one more reduce

    commit 3d854e52055de0f53f4ba16b0713ac581611ef94
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 20:21:26 2021 +0100

        more reduce edits

    commit 2bbddafaacf46f65c950738a9db3cbaddb198763
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 20:12:31 2021 +0100

        make reduce args consistent

    commit dfbe103c3425ba4d8aa91095ec5b7386fb785225
    Merge: f03b67592 dd28a57f6
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 19:01:59 2021 +0100

        Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950

    commit f03b67592cbff91172a50213cf0f9621062114cb
    Merge: 411d75d5c 7a201de64
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 19:01:42 2021 +0100

        Merge branch 'main' into pr/5950

    commit dd28a57f66188db47a05fad184519295d688213d
    Author: dcherian <deepak@cherian.net>
    Date:   Sat Nov 20 10:57:22 2021 -0700

        updates

    commit 6a9a1240aa95d71ef2081f6e98152981f9db336d
    Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
    Date:   Sat Nov 20 17:02:07 2021 +0000

        [pre-commit.ci] auto fixes from pre-commit.com hooks

        for more information, see https://pre-commit.ci

    commit 411d75d5ced18349968c060918e9bdcd4be04537
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 18:00:08 2021 +0100

        Now get normal code running as well

        Protocols are not needed anymore when subclassing/defining directly in the class.

        When adding a dummy method in DatasetResampleReductions the order of subclassing had to be changed so the correct reduce was used.

    commit 5dcb5bfebe04302beb732259f3e805bd31691ed8
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Sat Nov 20 12:30:50 2021 +0100

        Attempt fixing typing errors

        Mixing in DatasetReduce fixes:
        xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]"  [misc]

        Switching to "Dateset" as returned type fixes:

        xarray/tests/test_groupby.py:77: error: Need type annotation for "expected"  [var-annotated]

    commit 7a201de643515aec9a0c88dc78253499528fa99f
    Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
    Date:   Fri Nov 19 11:37:20 2021 -0700

        [pre-commit.ci] pre-commit autoupdate (#5990)

    commit 95394d5bcbd7d73bae34c091a080c42bcfc9f07d
    Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
    Date:   Mon Nov 15 21:40:37 2021 +0100

        Use set_options for asv bottleneck tests (#5986)

        * Use set_options for bottleneck tests

        * Use set_options in rolling

        * Update rolling.py

        * [pre-commit.ci] auto fixes from pre-commit.com hooks

        for more information, see https://pre-commit.ci

        * Update rolling.py

        * Update rolling.py

        * set_options not needed.

        Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

    commit b2d7cd8837ea9b3e7e0eb0390479a1986f62d4b4
    Author: Kai Mühlbauer <kmuehlbauer@users.noreply.github.com>
    Date:   Mon Nov 15 18:33:43 2021 +0100

        Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (#5959)

        Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

    commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f
    Author: dcherian <deepak@cherian.net>
    Date:   Wed Nov 10 11:49:47 2021 -0700

        Minor improvement

    commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3
    Author: dcherian <deepak@cherian.net>
    Date:   Mon Nov 8 16:18:07 2021 -0700

         REfactor

    commit 9bb2c321e8df2f5978c40a1c3c8f891c77e847ff
    Author: dcherian <deepak@cherian.net>
    Date:   Mon Nov 8 13:56:53 2021 -0700

        Reorder docstring to match numpy

    commit 99bfe128066ec3ef1b297650a47e2dd0a45801a8
    Author: dcherian <deepak@cherian.net>
    Date:   Mon Nov 8 12:44:23 2021 -0700

        Fixes #5898

    commit 7f39cc0d8c664e3fcf354536ed3a95882064b4b6
    Author: dcherian <deepak@cherian.net>
    Date:   Mon Nov 8 12:39:00 2021 -0700

        Minor docstring improvements.

    commit a04ed824a55b757937a4db4aa65729dccf62c1a7
    Author: dcherian <deepak@cherian.net>
    Date:   Mon Nov 8 12:35:48 2021 -0700

        Small changes

    commit 816e7941e47b14280103d5d10da94139f394c0cd
    Author: dcherian <deepak@cherian.net>
    Date:   Sun Nov 7 20:56:37 2021 -0700

        Generate DataArray, Dataset reductions too.

    commit 569c67f28b3e7ff4c475793325a4388220932d02
    Author: dcherian <deepak@cherian.net>
    Date:   Sun Nov 7 20:54:42 2021 -0700

        Add ddof for var, std

    commit 6b9a81a6fbe3ba460d905f0e92105d8e25af3ebb
    Author: dcherian <deepak@cherian.net>
    Date:   Sun Nov 7 20:35:52 2021 -0700

        Better generator for reductions.

commit cfd2c071cf8df984e5bc4c673abc84e17882d323
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 21:02:44 2021 -0700

    minimize conflicts

commit af03ca45ed4c54b867bacf4359df565b3878c220
Author: Deepak Cherian <deepak@cherian.net>
Date:   Thu Nov 25 20:52:03 2021 -0700

    Small improvement to resampling

commit 6916fa7debfe4ca5c5ce9796fe5fe3243d6c4d2a
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Mon Nov 22 11:16:43 2021 -0700

    Update xarray/util/generate_reductions.py

    Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>

commit 4f378a3fcbcda32d62c401f6f51065381b07074d
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 22 11:09:04 2021 -0700

    Bugfix DataArray resampling.

commit cd8a898d5b003ea28ec8f3feacb56d76b6dc1096
Author: dcherian <deepak@cherian.net>
Date:   Sat Nov 20 14:37:17 2021 -0700

    add doctests

commit 19d82cddf0a4ac30811803de9f7e70a881d52ea0
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 22:00:29 2021 +0100

    more reduce

commit 0f94bec2953aa3e7eadd0c4efc25cd6111b7e663
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 20:48:27 2021 +0100

    another reduce

commit be33560a14ac4b9379e5d0ff4f340cfbd6d552f1
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 20:28:39 2021 +0100

    one more reduce

commit 3d854e52055de0f53f4ba16b0713ac581611ef94
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 20:21:26 2021 +0100

    more reduce edits

commit 2bbddafaacf46f65c950738a9db3cbaddb198763
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 20:12:31 2021 +0100

    make reduce args consistent

commit dfbe103c3425ba4d8aa91095ec5b7386fb785225
Merge: f03b67592 dd28a57f6
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 19:01:59 2021 +0100

    Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950

commit f03b67592cbff91172a50213cf0f9621062114cb
Merge: 411d75d5c 7a201de64
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 19:01:42 2021 +0100

    Merge branch 'main' into pr/5950

commit dd28a57f66188db47a05fad184519295d688213d
Author: dcherian <deepak@cherian.net>
Date:   Sat Nov 20 10:57:22 2021 -0700

    updates

commit 6a9a1240aa95d71ef2081f6e98152981f9db336d
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Sat Nov 20 17:02:07 2021 +0000

    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci

commit 411d75d5ced18349968c060918e9bdcd4be04537
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 18:00:08 2021 +0100

    Now get normal code running as well

    Protocols are not needed anymore when subclassing/defining directly in the class.

    When adding a dummy method in DatasetResampleReductions the order of subclassing had to be changed so the correct reduce was used.

commit 5dcb5bfebe04302beb732259f3e805bd31691ed8
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date:   Sat Nov 20 12:30:50 2021 +0100

    Attempt fixing typing errors

    Mixing in DatasetReduce fixes:
    xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]"  [misc]

    Switching to "Dateset" as returned type fixes:

    xarray/tests/test_groupby.py:77: error: Need type annotation for "expected"  [var-annotated]

commit 8f23310e68c1a08c318471cdcd9d9b5b61d236a4
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 19 14:50:01 2021 -0700

    Revert "Force failure to make sure CI is working."

    This reverts commit 098467d3406c3de0cb7e2aaf38639f7ea74800ed.

commit a282ad47362111da4efc637ccdaed01824a2e39c
Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date:   Thu Nov 18 14:11:30 2021 +0000

    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci

commit 098467d3406c3de0cb7e2aaf38639f7ea74800ed
Author: dcherian <deepak@cherian.net>
Date:   Thu Nov 18 07:09:17 2021 -0700

    Force failure to make sure CI is working.

commit bd24db4881646aba2c0466e93d6989c187aaae98
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 17 20:24:48 2021 -0700

    Add to all-but-dask

commit 033f5b590fb4df4acadff70515fd3c14b0f10935
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 17 20:24:10 2021 -0700

     Add to print_versions

commit cc8abfe28a426afe56d289307b7a9818d52c7d40
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 16 10:13:05 2021 -0700

    [test-upstream] Rename to flox

commit b269439cac3f58be18c02007b53d2cfbddd77cd8
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 17:54:27 2021 -0700

    [test-upstream] Revert setting npg option in benchmarks

commit ced9034d99e618c70ba397e3aee5f53a2e475fd0
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 15:29:38 2021 -0700

    Update upstream-dev env

commit 860f7be3cc8af1cfdc586dc6d466399ed56e4d65
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 15:22:02 2021 -0700

     add extra test

commit 7375dd4d6c6f8fafb771e99e0c9f27c79aad0d9b
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 14:54:23 2021 -0700

    fix test.

commit 1f370f65f394256b16841d812557e8867ae43cbe
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 14:30:03 2021 -0700

    silence warning

commit e038cc7a27449b693e19b2bac1003fb368466221
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 15 10:10:53 2021 -0700

    Fix dimension order when binning a dimension coordinate

commit 03b7b31da98842a216801f422151bd4ab130d9cf
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 14 20:39:48 2021 -0700

    one more bugfix

commit 553735eb4dbe98d23f3a43db90f134a3cabd642a
Merge: 43ade8cbd a883ed022
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 14 20:34:01 2021 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Check for py version instead of try/except when importing entry_points (#5988)
      Add "see also" in to_dataframe docs (#5978)
      Alternate method using inline css to hide regular html output in an untrusted notebook (#5880)
      Fix mypy issue with entry_points (#5979)
      Remove pre-commit auto update (#5958)
      Do not change coordinate inplace when throwing error (#5957)
      Create CITATION.cff (#5956)

commit 43ade8cbdbcd2bf9fc950a6fc5f5d2078b56e86f
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 14 20:32:06 2021 -0700

    "blockwise" need not be the best strategy for resample..

commit c189eea36b3bb993451c2cb6765be4cd07449b67
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 14 09:58:40 2021 -0700

    Fix upsampling with resample

    (these have "empty groups")

commit edbd376c792f54ade6a9447674b15a79f44c983b
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 14 09:57:32 2021 -0700

    Fix binning and weird issues with precision and pd.cut

commit 415eb294af77b36f481f3c934baf617d1f55bb1e
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 12 15:47:10 2021 -0700

    Fix bug when binning by nD variable.

commit e9af57c28638288532b470334547223221e1a397
Author: dcherian <deepak@cherian.net>
Date:   Thu Nov 11 13:36:07 2021 -0700

    Try fixing mypy

commit 9c2cbb8df424ff8d6e6c6faae5abc24c15a4e84b
Author: dcherian <deepak@cherian.net>
Date:   Thu Nov 11 13:25:50 2021 -0700

    Ppass through objects with only numpy or dask arrays

commit 35908b590d04f7c66508d6dcea30e6ed8351ac64
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 14:33:44 2021 -0700

    Revert "See if its an import error"

    This reverts commit be53f13b1dd832a4ba221458f64f6c277998e9da.

commit be53f13b1dd832a4ba221458f64f6c277998e9da
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 12:55:58 2021 -0700

    See if its an import error

commit 11c3d3398a12b2abcd6fd1de0af689a5d673730f
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 12:37:24 2021 -0700

    Fixed doctests in dask_groupby

commit 77d2665458db1eec682c725e4dcdfef78454fc30
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 12:12:39 2021 -0700

    Revert "Force test failure to check CI env"

    This reverts commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2.

commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 11:49:47 2021 -0700

    Minor improvement

commit 47b593c481ecb93fe83dd6b9458d5683cc93119f
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 09:10:39 2021 -0700

    Use conda-forge numpy_groupies in CI

commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2
Author: dcherian <deepak@cherian.net>
Date:   Wed Nov 10 09:06:36 2021 -0700

    Force test failure to check CI env

commit 0559ee151420c31ac713829b74c3148fdfd46fa5
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 21:33:56 2021 -0700

    Fix var, std doctests

commit 41f0aa5aaf89b83bee6eb8f9f87f497cb4efd31e
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 19:27:57 2021 -0700

    fix test

commit bece14e22794e5fadb9e3b3b34af920fcc2be77f
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 17:41:13 2021 -0700

    Fix median and add test.

commit b9bc1dd0dd6e73793315457e9c9e23cf52428b4c
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 17:01:27 2021 -0700

    Update reductions

commit 0ac5498c87492d595a6860d1bb2d1f4183b329e3
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 10:12:40 2021 -0700

    Avoid stacking by default

commit c9a82b3fe9d2dcc0ddee6015595be01a01d5ad00
Author: dcherian <deepak@cherian.net>
Date:   Tue Nov 9 10:09:29 2021 -0700

    Revert "Start supporting ndim groups"

    This reverts commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296.

commit 35af40ad26ca9e2193313d7794789ec96cd7f0ba
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 21:58:02 2021 -0700

    Revert "WIP refactor init"

    This reverts commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce.

commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 21:57:55 2021 -0700

    WIP refactor init

commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 21:57:21 2021 -0700

    Start supporting ndim groups

commit 583187a4118613f98d8a7082790724070a3df3ea
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 21:08:53 2021 -0700

    Fix benchmark to not groupby chunked variables.

commit 3e08964dca9371ff93139f67bbc6a0170c48c28d
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 16:54:52 2021 -0700

    Add benchmarks

commit 0c35c0c67dcd0852b08d4408c45e3790fc9b000e
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 16:41:26 2021 -0700

    Reimplemented

commit 0661c1b667436ca5fde59cd987a1a2db94d9a75e
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 16:40:20 2021 -0700

    Refactored generator

commit f06e6a7d5ec6575df9ac6772c6092dfa81980ae8
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 16:24:11 2021 -0700

    Revert "Separate out median"

    This reverts commit 932b9a5d668278019bbd75ea23582ff28a463b91.

commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 16:18:07 2021 -0700

     REfactor

commit 9bb2c321e8df2f5978c40a1c3c8f891c77e847ff
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 13:56:53 2021 -0700

    Reorder docstring to match numpy

commit 08911b9a155ca7a2f95b466fba1f97538d45f1a6
Merge: a2168df2d 20fddb7e3
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 13:58:11 2021 -0700

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main:
      Add groupby & resample benchmarks (#5922)
      Fix plot.line crash for data of shape (1, N) in _title_for_slice on format_item (#5948)
      Disable unit test comments (#5946)
      Publish test results from workflow_run only (#5947)

commit 99bfe128066ec3ef1b297650a47e2dd0a45801a8
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 12:44:23 2021 -0700

    Fixes #5898

commit 7f39cc0d8c664e3fcf354536ed3a95882064b4b6
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 12:39:00 2021 -0700

    Minor docstring improvements.

commit a04ed824a55b757937a4db4aa65729dccf62c1a7
Author: dcherian <deepak@cherian.net>
Date:   Mon Nov 8 12:35:48 2021 -0700

    Small changes

commit 816e7941e47b14280103d5d10da94139f394c0cd
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 7 20:56:37 2021 -0700

    Generate DataArray, Dataset reductions too.

commit 569c67f28b3e7ff4c475793325a4388220932d02
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 7 20:54:42 2021 -0700

    Add ddof for var, std

commit 6b9a81a6fbe3ba460d905f0e92105d8e25af3ebb
Author: dcherian <deepak@cherian.net>
Date:   Sun Nov 7 20:35:52 2021 -0700

    Better generator for reductions.

commit a2168df2d595c4220a989fb99569196e0951d92f
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 22:09:22 2021 -0600

    typo again

commit d238459ae2bbe2a38f855e12ca4752c2fd28051c
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 21:50:30 2021 -0600

    any,all

commit ac85e72607594daf014e6afa50966289d5c1cc7f
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 21:31:22 2021 -0600

    make dask_groupby actually optional

commit 932b9a5d668278019bbd75ea23582ff28a463b91
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 21:27:23 2021 -0600

    Separate out median

commit ad25f78be0250de7cc574c7941b2149015dde26c
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 19:52:36 2021 -0600

    Add to asv env

commit 3608e9fa135ac93231cbf4f8bff007887a10e19d
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 15:26:28 2021 -0600

    get working again

commit faee02c7cb95dcc97a71e2fb0b2627c0ca49f2ed
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 12:37:36 2021 -0600

    fix env stuff + remove env var

commit 77f0e0e0765bcf335222ea0aad58b3700a76ea29
Merge: 0f2c59f7c 1ecf91a4d
Author: dcherian <deepak@cherian.net>
Date:   Fri Nov 5 12:33:04 2021 -0600

    Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies

    * upstream/main: (27 commits)
      Generator for groupby reductions (#5871)
      whats-new dev
      whats-new for 0.20.1 (#5943)
      Docs: fix URL for PTSA (#5935)
      Fix a missing @requires_zarr in tests (#5936)
      fix the detection of backend entrypoints (#5931)
      Explicitly list all reductions in api.rst (#5903)
      DOC: add names of missing contributors to 0.20.0 (#5932)
      new whats-new.rst section
      Update open_rasterio deprecation version number (#5916)
      v0.20 Release notes (#5924)
      [skip-ci] v0.20.0: whats-new for release (#5905)
      Update minimum dependencies for 0.20 (#5917)
      Bump actions/github-script from 4.1 to 5 (#5826)
      remove requirement for setuptools.pkg_resources (#5845)
      Update docstring for apply_ufunc, set_options (#5904)
      Display coords' units for slice plots (#5847)
      Combine by coords dataarray bugfix (#5834)
      Add .chunksizes property (#5900)
      Add typing_extensions as a required dependency (#5911)
      ...

commit 0f2c59f7c31f8d2cd06d64ec3f4d69d87d2eeb85
Merge: 4b25db574 df7646182
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Tue Oct 26 17:01:49 2021 -0600

    Merge branch 'main' of github.com:pydata/xarray into groupby-aggs-using-numpy-groupies

commit 4b25db574d9f13059d3b0d6319ae18f9e534b6d6
Merge: e3b3a00c6 262a3f5dd
Author: dcherian <deepak@cherian.net>
Date:   Tue Oct 5 14:49:30 2021 +0530

    Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies

    * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
      Update ci/requirements/environment-windows.yml

commit e3b3a00c6a1e1e8cc8e20c1f2a1051efaafe9297
Author: dcherian <deepak@cherian.net>
Date:   Tue Oct 5 14:48:25 2021 +0530

    Fix resampling

commit 262a3f5dd3a22f82a719d61ac7a95758fa1d2e9b
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date:   Mon Oct 4 11:10:44 2021 +0530

    Update ci/requirements/environment-windows.yml

commit 9b44db9e6d3db00ab8301fe426768925e8a2ff2f
Author: dcherian <deepak@cherian.net>
Date:   Mon Oct 4 10:45:39 2021 +0530

    Fix keep_attrs test

commit b97ffcb37b416e93c5481d6ce363f74e61e88dbc
Author: dcherian <deepak@cherian.net>
Date:   Mon Oct 4 10:44:04 2021 +0530

    Fix windows  env

commit f4748ee80fc993f9fd9a8b4dd76d242c778b64ae
Author: dcherian <deepak@cherian.net>
Date:   Mon Oct 4 10:28:08 2021 +0530

    typo

commit 1d9a36053181aeedbc90c3eec5a3457327630771
Author: dcherian <deepak@cherian.net>
Date:   Mon Oct 4 10:21:33 2021 +0530

    Add CI for now

commit 462e61b79f6ecfef24275622e84378673f9e9950
Author: dcherian <deepak@cherian.net>
Date:   Mon Oct 4 10:16:15 2021 +0530

    Don't pass numeric_only to DataArray.reduce

    Tests pass!

commit b1e3ab25e85ad3df302209c22639e6af11b1d443
Author: dcherian <deepak@cherian.net>
Date:   Sun Oct 3 17:37:07 2021 +0530

    Raise error when reducing along indexed dimensions with squeeze=True

commit 69fd5638c45fbfe374aba6494586bd8b48aee652
Author: dcherian <deepak@cherian.net>
Date:   Sun Oct 3 17:30:10 2021 +0530

    Avoid forwarding  DummyGroup objects

commit 58c1c6b7f6158af51553249389f6da1651c97b08
Author: dcherian <deepak@cherian.net>
Date:   Sun Oct 3 16:06:57 2021 +0530

    Add _dask_groupby_kwargs

commit af4cc5d44ff95e0a4aace6e867de26b1f94e63fd
Author: dcherian <deepak@cherian.net>
Date:   Sun Oct 3 16:05:31 2021 +0530

    Fix reduce  methods

commit cdf7612b6deac9f4b1b793d2f0014507c6e289f9
Author: dcherian <deepak@cherian.net>
Date:   Sun Oct 3 12:50:27 2021 +0530

    Fix resample test

commit 489b2ffbc10eb62e94beee4b6fb3e2e55872d4b4
Merge: 4702c9d85 54dba584d
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Sun Sep 26 15:47:30 2021 -0600

    Merge branch 'main' into groupby-aggs-using-numpy-groupies

commit 4702c9d85ccfd835c1e59073a9588b8a7277f8a5
Merge: e6bcce903 9be0228af
Author: dcherian <deepak@cherian.net>
Date:   Tue Aug 24 12:37:14 2021 -0600

    Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby_npg

    * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
      Bump actions/github-script from 4.0.2 to 4.1 (#5730)
      Set coord name concat when `concat`ing along a DataArray (#5611)
      Add .git-blame-ignore-revs (#5708)
      Type annotate tests (#5728)
      Consolidate TypeVars in a single place (#5569)
      add storage_options arg to to_zarr (#5615)
      dataset `__repr__` updates (#5580)
      Xfail failing test on main (#5729)
      Add xarray-dataclasses to ecosystem in docs (#5725)
      extend show_versions (#5724)
      Move docstring for xr.set_options to numpy style (#5702)
      Refactor more groupby and resample tests (#5707)
      Remove suggestion to install pytest-xdist in docs (#5713)
      Add typing to the OPTIONS dict (#5678)
      Change annotations to allow str keys (#5690)
      Whatsnew for float-to-top (#5714)
      Use isort's float-to-top (#5695)
      Fix errors in test_latex_name_isnt_split for min environments (#5710)
      Improves rendering of complex LaTeX expressions as `long_name`s when plotting (#5682)
      Use same bool validator as other inputs (#5703)

commit e6bcce9033db6da748f4b89057ef165cd6fcb6f7
Author: dcherian <deepak@cherian.net>
Date:   Tue Aug 24 12:35:51 2021 -0600

    some fixes

commit 9be0228afe1e625c707215a6a5d29c993ebdd90b
Merge: 35944e434 a6b44d720
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Tue Aug 24 12:06:03 2021 -0600

    Merge branch 'pydata:main' into groupby-aggs-using-numpy-groupies

commit 35944e434d30fdc9d4094248d0898ae8a249726c
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Fri Aug 13 15:23:09 2021 -0600

    Remove `_numpy_groupies.py` module

commit f0883921adf57d5c21ddb17ff9001ba8dba99514
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Aug 12 18:49:48 2021 -0600

    Fix position keyword arguments

commit 3ee620018e7e6a742a4c6d107911196b22282332
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Aug 12 18:47:32 2021 -0600

    Remove comments

commit 511dd448de6877f8af0d1356bf16bb20d481c209
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Aug 12 18:43:13 2021 -0600

    Add more aggregations

commit ef91e6e24eb13a2974268be2c7e0479dbd219e5e
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Aug 12 18:24:03 2021 -0600

    Add _numpy_groupies module

commit c486df7720edf547e336112a376a7d444f2f8778
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date:   Thu Aug 12 16:09:54 2021 -0600

    Move `_reduce_method` classmethod to `groupby.py` module
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
run-benchmark Run the ASV benchmark workflow
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Very poor html repr performance on large multi-indexes
3 participants