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Heterogeneous Graph Support + GraphGym #3068

Merged
merged 109 commits into from
Sep 3, 2021
Merged

Heterogeneous Graph Support + GraphGym #3068

merged 109 commits into from
Sep 3, 2021

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rusty1s
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@rusty1s rusty1s commented Sep 2, 2021

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rusty1s and others added 30 commits June 9, 2021 08:48
* Adding the Facebok Page-Page dataset

* type hints

* documentation CI

* py 3.8

* fix links

* fix links

* fail on warning

* fail on warning

* fix doc

Co-authored-by: benedekrozemberczki <benedek.rozemberczki@gmail.com>
* fix doc rendering

* fix linting

* retrigger checks
* fix deepcopy within lazy Linear

* fix merge

* assert exception
* add tex

* add svg + docstring

* typo

* added equation
* add hooks

* docstring

* add docstring

* allow modification of inputs/output

* add test for modifying output

* add additional asserts for modifying output test
* rename to_edges and to_nodes

* typo
* clean heteroconv

* init

* init

* clean up

Co-authored-by: rusty1s <matthias.fey@tu-dortmund.de>
rusty1s and others added 26 commits August 24, 2021 20:06
* move graphsaint

* deprecations

* move clusterloader

* deprecations

* type hints

* move shadow

* typo

* typo

* move datalistloader

* dense data loader

* random node sampler

* fix doc
* lazy cheb conv

* lazy GraphConv

* lazy GATv2Conv

* lazy TAGConv

* lazy FAConv

* lazy FeaStConv

* lazy NNConv

* typo

* fix tests

* lazy SuperGATConv

* lazy SuperGATConv fix

* lazy SplineConv

* fix lazy check

* lazy GravNetConv

* arma conv lazy

* dense linear in gmmconv

* typo

* add test

* lazy GMMConv

* doc
* revisit metapath2vec

* update

* typo

* update

* fix doc

* update

* check for attributes rather than key
* remove print_layer_stats

* typos

* update
* readme highlights and quick tour

* arch

* arch image

* arch overview

* list categories

* categorization

* category description

* Update README.md

from Matthias

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* improved highlights

* Update README.md

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* Update README.md

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* Update README.md

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* Update README.md

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* minor

* update readme

* update

* update

* update

* update

* fix url

* update

* update

* update

* update

* update

* update

* move ops

* toc

* typo

* typo

* add svgs

* update figure

* fix links

* fix size

* fix size

* typo

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>
* initial commit

* address comments
* temp checkpoint (wip, will remove)

* (wip) typed graph conversion

* (wip) typed graph conversion

* (wip) typed graph conversion

* update

* typo

* delete examples

Co-authored-by: rusty1s <matthias.fey@tu-dortmund.de>
…aLoader` (#120)

* move dataloader

* rename

* typos

* typos
…t` (#121)

* deprecate train_test_split_edges

* to device transform

* fix example

* add split_labels argument

* fix autoencoder example

* typos

* add docstring

* ARGVA

* seal

* adress comments
* create example to load csv file and transfer to heter-data

* add ipython notebook version load csv with documentation

* address comment

* first version of csv loading doc

* first version of csv loading doc

* suggestion docs/source/notes/loading_csv.rst

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* suggestion docs/source/notes/loading_csv.rst

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* suggestion docs/source/notes/loading_csv.rst

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* suggestion docs/source/notes/loading_csv.rst

Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>

* suggestions csv tutorial

* example script load csv + extract fix

* fixed edge index stacking dimension in example and jupyter nb

* linting

* linting2

* rename

* update

* update

* update

* typo

* typo

* update

* rename

* update tutorial

* typo

* address comments

Co-authored-by: Dong Wang <dongwang@yannis-air.lan>
Co-authored-by: Jan Eric Lenssen <janeric.lenssen@tu-dortmund.de>
Co-authored-by: Matthias Fey <matthias.fey@tu-dortmund.de>
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codecov-commenter commented Sep 2, 2021

Codecov Report

Merging #3068 (7c08f7d) into master (7edb81a) will decrease coverage by 11.28%.
The diff coverage is 42.84%.

Impacted file tree graph

@@             Coverage Diff             @@
##           master    #3068       +/-   ##
===========================================
- Coverage   84.14%   72.85%   -11.29%     
===========================================
  Files         214      282       +68     
  Lines        9736    13627     +3891     
===========================================
+ Hits         8192     9928     +1736     
- Misses       1544     3699     +2155     
Impacted Files Coverage Δ
torch_geometric/graphgym/benchmark.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/checkpoint.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/cmd_args.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/config.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/contrib/__init__.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/contrib/act/__init__.py 0.00% <0.00%> (ø)
...orch_geometric/graphgym/contrib/config/__init__.py 0.00% <0.00%> (ø)
...rch_geometric/graphgym/contrib/encoder/__init__.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/contrib/head/__init__.py 0.00% <0.00%> (ø)
torch_geometric/graphgym/contrib/layer/__init__.py 0.00% <0.00%> (ø)
... and 182 more

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@rusty1s rusty1s merged commit 6b423ba into master Sep 3, 2021
@rusty1s rusty1s deleted the vrtex-team-master branch September 3, 2021 05:51
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6 participants